RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 OTUD4Q01804 1114 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 HECTD3Q5T447 861 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 KCTD16Q68DU8 428 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MRNIPQ6NTE8 343 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ADAM21Q9UKJ8 722 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 CACNA1AO00555 2505 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MBLAC1A4D2B0 266 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 HACD1B0YJ81 288 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 GJB1P08034 283 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 RARAP10276 462 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 GLUD2P49448 558 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TBX4P57082 545 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 SESN2P58004 480 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 PTP4A2Q12974 167 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 POLD3Q15054 466 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 PSMD5Q16401 504 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 RAPH1Q70E73 1250 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 CCDC197Q8NCU1 140 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ATP6V1E2Q96A05 226 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 KREMEN1Q96MU8 473 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 RILPQ96NA2 401 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ADAM28Q9UKQ2 775 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 USP20Q9Y2K6 914 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ASB3Q9Y575 518 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MAGEB16A2A368 324 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 SNRPAP09012 282 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TGM2P21980 687 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ACAT1P24752 427 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 LRPAP1P30533 357 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 IFNAR2P48551 515 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 STX1BP61266 288 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 KYNUQ16719 465 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 CCDC38Q502W7 563 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 MFSD4BQ5TF39 518 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 FBXO46Q6PJ61 603 aaPredicted RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 TMA16Q96EY4 203 aaKnown RBP7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ATP6V1G3Q96LB4 118 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 DUSP16Q9BY84 665 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 LRRC40Q9H9A6 602 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 DUSP10Q9Y6W6 482 aa7.12□□□□□ -1.27
SF3B1-201ENST00000335508 ADRA1BP35368 520 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PURAQ00577 322 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SLC7A5Q01650 507 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 AP1B1Q10567 949 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PTK6Q13882 451 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 MFSD7Q6UXD7 560 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 NPAS4Q8IUM7 802 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 C2orf15Q8WU43 125 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 IRGQQ8WZA9 623 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PACSIN1Q9BY11 444 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 WHRNQ9P202 907 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 GRIN2DO15399 1336 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 CLUHO75153 1309 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 FAM170AA1A519 330 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PITPNM1O00562 1244 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 XPO1O14980 1071 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ATMINO43313 823 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 C4BPAP04003 597 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 RGS4P49798 205 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ATP1A2P50993 1020 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ADIGQ0VDE8 80 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 APTXQ7Z2E3 356 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TEKT4Q8WW24 435 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TRIM55Q9BYV6 548 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 RAB21Q9UL25 225 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 STXBP5LQ9Y2K9 1186 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ANGPTL3Q9Y5C1 460 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 RAD54BQ9Y620 910 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SLC4A7Q9Y6M7 1214 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 NCANO14594 1321 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TLR5O60602 858 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ITGBL1O95965 494 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 JCHAINP01591 159 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 CYP1A2P05177 515 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 HSPA9P38646 679 aaKnown RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TM4SF4P48230 202 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 EFEMP1Q12805 493 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ZSCAN26Q16670 478 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SLC28A3Q9HAS3 691 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SEC16AO15027 2179 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TIMM44O43615 452 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 RALBP11234 206 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 ATRXP46100 2492 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SLCO1A2P46721 670 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 CTCFP49711 727 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 C9orf57Q5W0N0 161 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 IL31Q6EBC2 164 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TBC1D1Q86TI0 1168 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 MYCBPAPQ8TBZ2 947 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 MS4A4AQ96JQ5 239 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PNPLA8Q9NP80 782 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SEPT3Q9UH03 358 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 SLC24A2Q9UI40 661 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 PLAAQ9Y263 795 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 TIMM13Q9Y5L4 95 aaPredicted RBP7.11□□□□□ -1.27
SF3B1-201ENST00000335508 DOT1LQ8TEK3 1739 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 RAD51CO43502 376 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 MAGEA4P43358 317 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 CCL23P55773 120 aa7.11□□□□□ -1.27
SF3B1-201ENST00000335508 DLG4P78352 724 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms