RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 AARS2Q5JTZ9 985 aaKnown RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 ANO1Q5XXA6 986 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 GGT6Q6P531 493 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CCDC174Q6PII3 467 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 PTCHD4Q6ZW05 846 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 EXOC8Q8IYI6 725 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SIRT6Q8N6T7 355 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SPATA5Q8NB90 893 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 ABHD11Q8NFV4 315 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 CAGE1Q8TC20 777 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 RSC1A1Q92681 617 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 VPS50Q96JG6 964 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 PRR25Q96S07 402 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 HERPUD2Q9BSE4 406 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 FSD1LQ9BXM9 530 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 AGO4Q9HCK5 861 aaKnown RBP3.92□□□□□ -1.78
HMGB1-201ENST00000326004 DACT1Q9NYF0 836 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 DLL3Q9NYJ7 618 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 IGSF9Q9P2J2 1179 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 SALL3Q9BXA9 1300 aa3.92□□□□□ -1.78
HMGB1-201ENST00000326004 NISCHQ9Y2I1 1504 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 H0YIZ8 118 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 FAM163BP0C2L3 166 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 MYCLP12524 364 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-201ENST00000326004 JUPP14923 745 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 CREB1P16220 341 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 CHKAP35790 457 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 ALDH18A1P54886 795 aaKnown RBP3.91□□□□□ -1.78
HMGB1-201ENST00000326004 EEFSECP57772 596 aaKnown RBP3.91□□□□□ -1.78
HMGB1-201ENST00000326004 E2F1Q01094 437 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 MTAPQ13126 283 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 FHL3Q13643 280 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 TUBB8Q3ZCM7 444 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 TMEM63BQ5T3F8 832 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 SFTPA1Q8IWL2 248 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 CACNA2D3Q8IZS8 1091 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 NKAPQ8N5F7 415 aaKnown RBP3.91□□□□□ -1.78
HMGB1-201ENST00000326004 METTL25Q8N6Q8 603 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 C11orf44Q8N8P7 122 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 ATG16L2Q8NAA4 619 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 STYXQ8WUJ0 223 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 TBC1D5Q92609 795 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 CTHRC1Q96CG8 243 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 KATNAL1Q9BW62 490 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 CHMP4AQ9BY43 222 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 PCED1AQ9H1Q7 454 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 TP63Q9H3D4 680 aaPredicted RBP3.91□□□□□ -1.78
HMGB1-201ENST00000326004 SNX15Q9NRS6 342 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 RXFP3Q9NSD7 469 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 LRFN1Q9P244 771 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 SLC17A6Q9P2U8 582 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 AMFRQ9UKV5 643 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 ADAMTS5Q9UNA0 930 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 ENTPD2Q9Y5L3 495 aa3.91□□□□□ -1.78
HMGB1-201ENST00000326004 ARHGEF17Q96PE2 2063 aaPredicted RBP3.9□□□□□ -1.78
HMGB1-201ENST00000326004 PNMA6EA0A0J9YXQ4 647 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 J3KTA2 159 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 AP4M1O00189 453 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ACKR2O00590 384 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 CES2O00748 559 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 PCDH17O14917 1159 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 DHHO43323 396 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ASNA1O43681 348 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 NBNO60934 754 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 CBFA2T3O75081 653 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 FSHBP01225 129 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ANXA6P08133 673 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ITGA2BP08514 1039 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ELFN1P0C7U0 828 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ENGP17813 658 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 WT1P19544 449 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-201ENST00000326004 DRD4P21917 467 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 PROZP22891 400 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 ADRA1DP25100 572 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 HALP42357 657 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 CACNA2D1P54289 1103 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 KLF10Q13118 480 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 CSHL1Q14406 222 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 TANGO2Q6ICL3 276 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 DPY19L3Q6ZPD9 716 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 NRSN1Q8IZ57 195 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.9□□□□□ -1.79
HMGB1-201ENST00000326004 PNPLA1Q8N8W4 532 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 WDR60Q8WVS4 1066 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 TRAPPC12Q8WVT3 735 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 OVCA2Q8WZ82 227 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 CCT6BQ92526 530 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 WDYHV1Q96HA8 205 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 UROC1Q96N76 676 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 TIMP4Q99727 224 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 THAP7Q9BT49 309 aaPredicted RBP3.9□□□□□ -1.79
HMGB1-201ENST00000326004 DUSP26Q9BV47 211 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 KRTAP9-3Q9BYQ3 159 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 MYLK2Q9H1R3 596 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 PPCSQ9HAB8 311 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 MGAT4CQ9UBM8 478 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 HERC5Q9UII4 1024 aaKnown RBP3.9□□□□□ -1.79
HMGB1-201ENST00000326004 TLK1Q9UKI8 766 aa3.9□□□□□ -1.79
HMGB1-201ENST00000326004 NFU1Q9UMS0 254 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms