RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TLR9Q9NR96 1032 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 EHD2Q9NZN4 543 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 MSRAQ9UJ68 235 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ATF2P15336 505 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 KLRC2P26717 231 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 MATKP42679 507 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 SULT1E1P49888 294 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 RWDD2BP57060 319 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 TAS2R40P59535 323 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ERVFC1P60507 584 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 RAB33AQ14088 237 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 CCDC14Q49A88 953 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 SH3PXD2AQ5TCZ1 1133 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ZNF572Q7Z3I7 529 aaPredicted RBP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 ALG3Q92685 438 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 EMILIN2Q9BXX0 1053 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 KLHL11Q9NVR0 708 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 SMARCAL1Q9NZC9 954 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 STAP1Q9ULZ2 295 aa10.48□□□□□ -0.73
HMGB3-201ENST00000325307 YBX2Q9Y2T7 364 aaKnown RBP10.48□□□□□ -0.73
HMGB3-201ENST00000325307 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CCDC189A1A4V9 331 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 TNFRSF10BO14763 440 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 DAB1O75553 588 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SEC24AO95486 1093 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 ADH1AP07327 375 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 GLI1P08151 1106 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 TCF4P15884 667 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CTNNA1P35221 906 aaKnown RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PAFAH1B1P43034 410 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 MTMR3Q13615 1198 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 BSPRYQ5W0U4 402 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 BTBD8Q5XKL5 378 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CCDC50Q8IVM0 306 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 NIPA2Q8N8Q9 360 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SPPL3Q8TCT6 385 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 FBXO32Q969P5 355 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 MS4A14Q96JA4 679 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PBKQ96KB5 322 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 GDF15Q99988 308 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 FUT8Q9BYC5 575 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 DONSONQ9NYP3 566 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 FNIP2Q9P278 1114 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 NAALADL1Q9UQQ1 740 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 LZTS1Q9Y250 596 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PCDHA3Q9Y5H8 950 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 KIAA1671Q9BY89 1806 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 DDX3YO15523 660 aaKnown RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 LRCH4O75427 683 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 ABLIM3O94929 683 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 RTN3O95197 1032 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PRLRP16471 622 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 YWHAQP27348 245 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 NME3Q13232 169 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 LLGL1Q15334 1064 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SMTNL2Q2TAL5 461 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SEL1L2Q5TEA6 688 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SLC7A14Q8TBB6 771 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 IRGQQ8WZA9 623 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CD101Q93033 1021 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 ACSF2Q96CM8 615 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 USP3Q9Y6I4 520 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CCDC151A5D8V7 595 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 GRM6O15303 877 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PSTPIP1O43586 416 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PRPSAP2O60256 369 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 RB1P06400 928 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 TFE3P19532 575 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 CTNNA2P26232 953 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 MIPP30301 263 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 NOS2P35228 1153 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 YWHAGP61981 247 aaKnown RBP eCLIP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 USP46P62068 366 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 VEPH1Q14D04 833 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 ACAP1Q15027 740 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 BEND6Q5SZJ8 279 aaPredicted RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 SYPL2Q5VXT5 272 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PM20D1Q6GTS8 502 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 TMCO3Q6UWJ1 677 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 ADAM32Q8TC27 787 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 TBCBQ99426 244 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 DDX23Q9BUQ8 820 aaKnown RBP10.47□□□□□ -0.73
HMGB3-201ENST00000325307 PBX4Q9BYU1 374 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 NKX2-4Q9H2Z4 354 aa10.47□□□□□ -0.73
HMGB3-201ENST00000325307 M0QYT0 321 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 DPYSL4O14531 572 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 ATP8B1O43520 1251 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 KRT1P04264 644 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 ATF6P18850 670 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 DNAJB1P25685 340 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 C2orf54Q08AI8 447 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 GPM6BQ13491 265 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RAB6CQ53S08 254 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 KCNT1Q5JUK3 1230 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 PPP2R2DQ66LE6 453 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 GPR65Q8IYL9 337 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 SPATA17Q96L03 361 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 TRIM62Q9BVG3 475 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RAB6CQ9H0N0 254 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms