RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CALB1P05937 261 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 FYNP06241 537 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 NCAM1P13591 858 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 HOXB8P17481 243 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 TFE3P19532 575 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 C1QBPQ07021 282 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 ATAT1Q5SQI0 421 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 SMYD5Q6GMV2 418 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 TRNP1Q6NT89 227 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 SMRP1Q8NCR6 262 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 MSANTD4Q8NCY6 345 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 TRMT2BQ96GJ1 504 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 MCEEQ96PE7 176 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 EIF3CQ99613 913 aaKnown RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 RNF38Q9H0F5 515 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 TRPM5Q9NZQ8 1165 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 COX16Q9P0S2 106 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 CD207Q9UJ71 328 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 USP15Q9Y4E8 981 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-201ENST00000311487 PAXBP1Q9Y5B6 917 aa19.04■□□□□ 0.64
HMGA1-201ENST00000311487 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-201ENST00000311487 GRXCR2A6NFK2 248 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 KIF2AO00139 706 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-201ENST00000311487 SCAMP3O14828 347 aaKnown RBP19.03■□□□□ 0.64
HMGA1-201ENST00000311487 H2AFZP0C0S5 128 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 RFC1P35251 1148 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-201ENST00000311487 FLT3P36888 993 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 MAMLD1Q13495 774 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 RAB6CQ53S08 254 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 DCAF6Q58WW2 860 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 BTBD8Q5XKL5 378 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 DNAJC24Q6P3W2 148 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 H2AFVQ71UI9 128 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 REXO1L1PQ8IX06 675 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 MCRS1Q96EZ8 462 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 SELENOOQ9BVL4 669 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 RAB6CQ9H0N0 254 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 POMKQ9H5K3 350 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 OSGEPQ9NPF4 335 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 TLR8Q9NR97 1041 aaKnown RBP19.03■□□□□ 0.64
HMGA1-201ENST00000311487 SFMBT1Q9UHJ3 866 aa19.03■□□□□ 0.64
HMGA1-201ENST00000311487 FAM92AA1XBS5 289 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 FBXO21O94952 628 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 LTFP02788 710 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 RARGP13631 454 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 YWHAZP63104 245 aaKnown RBP19.02■□□□□ 0.64
HMGA1-201ENST00000311487 PRSS36Q5K4E3 855 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 DAB2IPQ5VWQ8 1189 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 MON1AQ86VX9 555 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 MIB1Q86YT6 1006 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 DEFB106AQ8N104 65 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 ARL14EPQ8N8R7 260 aaPredicted RBP19.02■□□□□ 0.64
HMGA1-201ENST00000311487 CMASQ8NFW8 434 aaPredicted RBP19.02■□□□□ 0.64
HMGA1-201ENST00000311487 ZNF592Q92610 1267 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 CFAP57Q96MR6 1250 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 LACRTQ9GZZ8 138 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 UXTQ9UBK9 157 aaPredicted RBP19.02■□□□□ 0.64
HMGA1-201ENST00000311487 PPP2R2CQ9Y2T4 447 aa19.02■□□□□ 0.64
HMGA1-201ENST00000311487 ANKRD62A6NC57 917 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 CAPN9O14815 690 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 IPO7O95373 1038 aaKnown RBP19.02■□□□□ 0.63
HMGA1-201ENST00000311487 LCA5LO95447 670 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 KRT3P12035 628 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 FSHRP23945 695 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 GPC5P78333 572 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 ITIH3Q06033 890 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 ZNF268Q14587 947 aaPredicted RBP19.02■□□□□ 0.63
HMGA1-201ENST00000311487 C10orf120Q5SQS8 335 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 GPR158Q5T848 1215 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 SH3PXD2AQ5TCZ1 1133 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 RTL10Q7L3V2 364 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 RSRC2Q7L4I2 434 aaKnown RBP19.02■□□□□ 0.63
HMGA1-201ENST00000311487 CTNNBL1Q8WYA6 563 aaPredicted RBP19.02■□□□□ 0.63
HMGA1-201ENST00000311487 NUP85Q9BW27 656 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 SLC46A2Q9BY10 475 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 ADAM33Q9BZ11 813 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 SMPD4Q9NXE4 827 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 COG5Q9UP83 839 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 A0A0C4DFX4 3053 aa19.02■□□□□ 0.63
HMGA1-201ENST00000311487 DYNC1I1O14576 645 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 ZSCAN12O43309 604 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 MSI1O43347 362 aaKnown RBP19.01■□□□□ 0.63
HMGA1-201ENST00000311487 TLR5O60602 858 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 EFEMP1Q12805 493 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 DCUN1D2Q6PH85 259 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 KIAA1328Q86T90 577 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 NACA2Q9H009 215 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 WDR6Q9NNW5 1121 aaKnown RBP19.01■□□□□ 0.63
HMGA1-201ENST00000311487 CYLDQ9NQC7 956 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 CALCOCO1Q9P1Z2 691 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 CTTNBP2NLQ9P2B4 639 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 STRIP2Q9ULQ0 834 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 ADGRG1Q9Y653 693 aa19.01■□□□□ 0.63
HMGA1-201ENST00000311487 TCRBV5S1A1TA0A578 114 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 COCHO43405 550 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 HMBSP08397 361 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 EPHA5P54756 1037 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 SNX16P57768 344 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 ATP11AP98196 1134 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 OGDHQ02218 1023 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms