RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TMEM25Q86YD3 366 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 C12orf56Q8IXR9 622 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 MINDY1Q8N5J2 469 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 SCAMP5Q8TAC9 235 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 GOLGA5Q8TBA6 731 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 SCFD1Q8WVM8 642 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 FOXJ1Q92949 421 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 HPS3Q969F9 1004 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 USP28Q96RU2 1077 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 KCNK16Q96T55 309 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 CCSER2Q9H7U1 834 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 TLR8Q9NR97 1041 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 DNAJC17Q9NVM6 304 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 DNAAF2Q9NVR5 837 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 GMIPQ9P107 970 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 LSM7Q9UK45 103 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ADAMTS9Q9P2N4 1935 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 FREM2Q5SZK8 3169 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 NBEAQ8NFP9 2946 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ITPR1Q14643 2758 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 IGHV1OR15-9A0A0B4J2B8 117 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 SPAARA0A1B0GVQ0 90 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 GFRA2O00451 464 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 CLIC2O15247 247 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 TLR5O60602 858 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 CLSTN1O94985 981 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 GNSP15586 552 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 BIRC3Q13489 604 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 E2F4Q16254 413 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 CHPFQ8IZ52 775 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 IPO4Q8TEX9 1081 aaKnown RBP15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 C7orf25Q9BPX7 421 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 ZDHHC4Q9NPG8 344 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 PCDH15Q96QU1 1955 aa15.63■□□□□ 0.09
CCDC88B-201ENST00000301897 A0A1W2PQF6 199 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 SPTLC2O15270 562 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 EXOC3O60645 756 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 NDUFS2O75306 463 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 IRF1P10914 325 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 E2F5Q15329 346 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 BMT2Q1RMZ1 405 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 WDR45BQ5MNZ6 344 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 LRSAM1Q6UWE0 723 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 UNC13DQ70J99 1090 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 LINC00301Q8NCQ3 95 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF516Q92618 1163 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 INTS4Q96HW7 963 aaKnown RBP15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 GABRG3Q99928 467 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 BBS2Q9BXC9 721 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 ZDHHC5Q9C0B5 715 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 SMYD3Q9H7B4 428 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 KRT82Q9NSB4 513 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 MARK1Q9P0L2 795 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 KLK13Q9UKR3 277 aa15.62■□□□□ 0.09
CCDC88B-201ENST00000301897 NEDD8-MDP1E9PL57 170 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 NPC1O15118 1278 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 PPP6R2O75170 966 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 CENPBP07199 599 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 TYRP14679 529 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 NDUFV2P19404 249 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 ATP5C1P36542 298 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF132P52740 706 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 EHHADHQ08426 723 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 NCOA4Q13772 614 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 COL9A2Q14055 689 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 EGFLAMQ63HQ2 1017 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 PAQR9Q6ZVX9 377 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 RAB44Q7Z6P3 723 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 NELFCDQ8IXH7 590 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 FUKQ8N0W3 1084 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 TRIML1Q8N9V2 468 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 TAF4BQ92750 862 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 DHX58Q96C10 678 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF419Q96HQ0 510 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 HSPA12BQ96MM6 686 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF396Q96N95 335 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 KLF16Q9BXK1 252 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 CSNK1G1Q9HCP0 422 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 CYLDQ9NQC7 956 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 TFIP11Q9UBB9 837 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 CYP8B1Q9UNU6 501 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 NFE2L3Q9Y4A8 694 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 PCDHB9Q9Y5E1 797 aa15.61■□□□□ 0.09
CCDC88B-201ENST00000301897 PVALEFA0A1B0GWK0 134 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 RPN1P04843 607 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 CD59P13987 128 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 WASP42768 502 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 CDH8P55286 799 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 CLDN10P78369 228 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 KNOP1Q1ED39 458 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 PLEKHG6Q3KR16 790 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 KLHDC10Q6PID8 442 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 TADA2BQ86TJ2 420 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 ACOT1Q86TX2 421 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 METTL3Q86U44 580 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 UNC93AQ86WB7 457 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 MIB1Q86YT6 1006 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 SLC41A1Q8IVJ1 513 aa15.6■□□□□ 0.09
CCDC88B-201ENST00000301897 RGL4Q8IZJ4 473 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms