RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RNASE12Q5GAN4 147 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-201ENST00000296043 DYNLL1P63167 89 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 DLG4P78352 724 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 TMC3Q7Z5M5 1100 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FRMD6Q96NE9 622 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 GFM1Q96RP9 751 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 C3orf70A6NLC5 250 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 HOXC9P31274 260 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 STAT5AP42229 794 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 STAT5BP51692 787 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 TPI1P60174 286 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 CENPCQ03188 943 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 PADI6Q6TGC4 694 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ATPAF2Q8N5M1 289 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 OSBP2Q969R2 916 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 CLCA2Q9UQC9 943 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 GJA3Q9Y6H8 435 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 METTL21EPA6NDL7 271 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MAP3K13O43283 966 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ZMPSTE24O75844 475 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SKIV2L2P42285 1042 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MTSS1O43312 755 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 NDUFS3O75489 264 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 BMP10O95393 424 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 NECTIN1Q15223 517 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FNBP1LQ5T0N5 605 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FBXO36Q8NEA4 188 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SH3TC2Q8TF17 1288 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FAR2Q96K12 515 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 CDRT15Q96T59 188 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SIK2Q9H0K1 926 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ARMCX2Q7L311 632 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MAGEE2Q8TD90 523 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 TRMT6Q9UJA5 497 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MAPRE3Q9UPY8 281 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 GPC6Q9Y625 555 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 POLBP06746 335 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ADSSP30520 456 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 VBP1P61758 197 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SURF1Q15526 300 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 AMER2Q8N7J2 671 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ABCG2Q9UNQ0 655 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 RPH3AQ9Y2J0 694 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 PCDHGA10Q9Y5H3 936 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 PNMA6FA0A0J9YX94 578 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MATN2O00339 956 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 DPYDQ12882 1025 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 GSTA3Q16772 222 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 PMF1Q6P1K2 205 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FBXW8Q8N3Y1 598 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF496Q96IT1 587 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 USP17L8P0C7I0 530 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FOSL1P15407 271 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 TAP1Q03518 808 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 FAPQ12884 760 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF235Q14590 738 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 SATL1Q86VE3 508 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MARK4Q96L34 752 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 APEX2Q9UBZ4 518 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 UBE2QL1A1L167 161 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 A1BGP04217 495 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 CCNFP41002 786 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 AP1S2P56377 157 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 HERVK_113P62684 666 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ABCB5Q2M3G0 1257 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 DNAJC14Q6Y2X3 702 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 C18orf25Q96B23 403 aaPredicted RBP12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 TBC1D10AQ9BXI6 508 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 MED28Q9H204 178 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 LIMD1Q9UGP4 676 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 CAPN6Q9Y6Q1 641 aa12.09□□□□□ -0.47
SHROOM3-201ENST00000296043 ZNF879B4DU55 563 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 RPS6KA5O75582 802 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 HDAC7Q8WUI4 952 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 NACC2Q96BF6 587 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TEX14Q8IWB6 1497 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SSU72P8A0A1W2PR75 194 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 KANSL1LA0AUZ9 987 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 GDF11O95390 407 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TTC30AQ86WT1 665 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 THNSL1Q8IYQ7 743 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ZBTB8BQ8NAP8 495 aaPredicted RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ABLIM1O14639 778 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FARP2O94887 1054 aaPredicted RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM49AQ9H0Q0 323 aaPredicted RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 PAK5Q9P286 719 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ZHX2Q9Y6X8 837 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ARHGEF10O15013 1369 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM172BPA6NC97 362 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SCGNO76038 276 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 NPR2P20594 1047 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM83EQ2M2I3 478 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ZNF605Q86T29 641 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SAMD3Q8N6K7 520 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 RAB21Q9UL25 225 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TM9SF1O15321 606 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SLC16A3O15427 465 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms