RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FZD1Q9UP38 647 aa14.15□□□□□ -0.14
LDLR-201ENST00000252444 HSPA4LO95757 839 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 RRM1P23921 792 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 AKAP5P24588 427 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 ZNF200P98182 395 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 PRKCZQ05513 592 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 ZCWPW2Q504Y3 356 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 LCLAT1Q6UWP7 414 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 ANKLE1Q8NAG6 615 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 ZW10O43264 779 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 YBX3P16989 372 aaKnown RBP eCLIP14.14□□□□□ -0.152e-8■□□□□ 9.8
LDLR-201ENST00000252444 TAL1P17542 331 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 ATP5C1P36542 298 aaKnown RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 HIRAP54198 1017 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 PPP3CAQ08209 521 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 TPGS2Q68CL5 300 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 STRADAQ7RTN6 431 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 RETREG1Q9H6L5 497 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 NOVA2Q9UNW9 492 aaKnown RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 CKMP06732 381 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 NFICP08651 508 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 VCPP55072 806 aaKnown RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 XRCC4Q13426 336 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 GJC2Q5T442 439 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 WDR24Q96S15 920 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 RBM15Q96T37 977 aaKnown RBP eCLIP14.14□□□□□ -0.159e-8■■■■□ 23.6
LDLR-201ENST00000252444 ASAH2Q9NR71 780 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 RGS17Q9UGC6 210 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 LAMB1P07942 1786 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 CD52P31358 61 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 PLA2G4AP47712 749 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 PSMD5Q16401 504 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 CCNI2Q6ZMN8 369 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 STAMBPL1Q96FJ0 436 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 FAR2Q96K12 515 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 C1QTNF7Q9BXJ2 289 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 SCUBE2Q9NQ36 999 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 FNIP2Q9P278 1114 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 COQ4Q9Y3A0 265 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 RGPD3A6NKT7 1758 aaPredicted RBP14.14□□□□□ -0.15
LDLR-201ENST00000252444 RGPD4Q7Z3J3 1758 aa14.14□□□□□ -0.15
LDLR-201ENST00000252444 SMIM22K7EJ46 135 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ZNF862O60290 1169 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 NDUFS3O75489 264 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ZWINTO95229 277 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 DDX6P26196 483 aaKnown RBP eCLIP14.13□□□□□ -0.156e-9■■■■■ 44.4
LDLR-201ENST00000252444 RRP1BQ14684 758 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 CBWD6Q4V339 395 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 PAN2Q504Q3 1202 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 CBWD3Q5JTY5 395 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 CBWD5Q5RIA9 395 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 NXNQ6DKJ4 435 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 MGARPQ8TDB4 240 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 EFHD1Q9BUP0 239 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 Q9H521 79 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SLC24A2Q9UI40 661 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 APOC4-APOC2K7ER74 178 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 APOC2P02655 101 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 TNFRSF8P28908 595 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 MTFR1Q15390 333 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 FASTKD1Q53R41 847 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 ZC3H18Q86VM9 953 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 HJURPQ8NCD3 748 aaPredicted RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 SLC2A14Q8TDB8 520 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 CEP295NLQ96MC4 621 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ZCCHC2Q9C0B9 1178 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 ACSL3O95573 720 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SNRPAP09012 282 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 HIST1H2AGP0C0S8 130 aaPredicted RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 HIST1H2ADP20671 130 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 TM4SF4P48230 202 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SULT2A1Q06520 285 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 PTP4A2Q12974 167 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 PEX6Q13608 980 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 RAB30Q15771 203 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ARHGAP17Q68EM7 881 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 PDE12Q6L8Q7 609 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 SIAH1Q8IUQ4 282 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 HIST1H2AHQ96KK5 128 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 POP1Q99575 1024 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 HIST1H2AJQ99878 128 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 H2AFJQ9BTM1 129 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ELAC1Q9H777 363 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 TBC1D14Q9P2M4 693 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SUN2Q9UH99 717 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 LAMA4Q16363 1823 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SDR42E2A6NKP2 422 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 C4BPAP04003 597 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 RAP1GAPP47736 663 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 SOX10P56693 466 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 ADIGQ0VDE8 80 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 EIF2B5Q13144 721 aaKnown RBP14.13□□□□□ -0.15
LDLR-201ENST00000252444 SLC39A12Q504Y0 691 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 PRAMEF19Q5SWL8 479 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 CAPN12Q6ZSI9 719 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 LMNTD2Q8IXW0 634 aa14.13□□□□□ -0.15
LDLR-201ENST00000252444 IGSF6O95976 241 aa14.12□□□□□ -0.15
LDLR-201ENST00000252444 HADHBP55084 474 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 SKIV2LQ15477 1246 aaKnown RBP14.12□□□□□ -0.15
LDLR-201ENST00000252444 SYTL3Q4VX76 610 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 403.3 ms