RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PLXNA4Q9HCM2 1894 aa9.07□□□□□ -0.96
VPS4B-201ENST00000238497 TRIM66O15016 1216 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ASGR2P07307 311 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ELF1P32519 619 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 MTHFRP42898 656 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 PSMC1P62191 440 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ITIH3Q06033 890 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SOX4Q06945 474 aaPredicted RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 OR6B2Q6IFH4 312 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LRRC31Q6UY01 552 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ZPBP2Q6X784 338 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SLFN11Q7Z7L1 901 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 EFCAB13Q8IY85 973 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 C12orf29Q8N999 325 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 KREMEN2Q8NCW0 462 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TFAP2BQ92481 460 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ZMAT2Q96NC0 199 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LPIN3Q9BQK8 851 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SMYD3Q9H7B4 428 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 VIPAS39Q9H9C1 493 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 FAM114A2Q9NRY5 505 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 STK39Q9UEW8 545 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LIMD1Q9UGP4 676 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SNX9Q9Y5X1 595 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 CDY1Q9Y6F8 540 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 RIF1Q5UIP0 2472 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ARID2Q68CP9 1835 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 M0QYV0 167 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 STK25O00506 426 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 ETS1P14921 441 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 COL9A1P20849 921 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 PSMA2P25787 234 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TKTP29401 623 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 IRAK1P51617 712 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 DSG1Q02413 1049 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 GCNT1Q02742 428 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 CUL1Q13616 776 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LRRC14Q15048 493 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LONRF1Q17RB8 773 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TXNRD3NBQ6F5E7 133 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 JADE1Q6IE81 842 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 DCLRE1AQ6PJP8 1040 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 DSTYKQ6XUX3 929 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SLITRK6Q9H5Y7 841 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SFXN1Q9H9B4 322 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TUBGCP4Q9UGJ1 667 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 DPP7Q9UHL4 492 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SGK1O00141 431 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 INPPL1O15357 1258 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TGM5O43548 720 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 PHF2O75151 1096 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 COILP38432 576 aaPredicted RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 PMS2P54278 862 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 COL19A1Q14993 1142 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 KYNUQ16719 465 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SLC10A6Q3KNW5 377 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 KIAA0319Q5VV43 1072 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TDRD5Q8NAT2 981 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 TMEM35BQ8NCS4 154 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 OR6B3Q8NGW1 331 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SLC22A17Q8WUG5 538 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 DDX1Q92499 740 aaKnown RBP9.06□□□□□ -0.96
VPS4B-201ENST00000238497 SNX27Q96L92 541 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 NECTIN4Q96NY8 510 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 HMGXB4Q9UGU5 601 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 LCMT1Q9UIC8 334 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 IRAK3Q9Y616 596 aa9.06□□□□□ -0.96
VPS4B-201ENST00000238497 POC1B-GALNT4F8VUJ3 575 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 PRRG1O14668 218 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 RGS16O15492 202 aaPredicted RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 CLCN4P51793 760 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 SNRPFP62306 86 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 UAP1Q16222 522 aaPredicted RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 SGSM1Q2NKQ1 1148 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 DENND1BQ6P3S1 775 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 GET4Q7L5D6 327 aaPredicted RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 BRSK2Q8IWQ3 736 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 DDX27Q96GQ7 796 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 CALR3Q96L12 384 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 HERPUD2Q9BSE4 406 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 SYT11Q9BT88 431 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 DDX23Q9BUQ8 820 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 UBXN6Q9BZV1 441 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 NIF3L1Q9GZT8 377 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 MRPL47Q9HD33 250 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 UVRAGQ9P2Y5 699 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 COQ4Q9Y3A0 265 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 NCANO14594 1321 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 BTNL10A8MVZ5 291 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 H0YHG0 523 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 EBAG9O00559 213 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 CCL16O15467 120 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 ADAM12O43184 909 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 XPOTO43592 962 aaKnown RBP9.05□□□□□ -0.96
VPS4B-201ENST00000238497 CPB1P15086 417 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 ATF2P15336 505 aa9.05□□□□□ -0.96
VPS4B-201ENST00000238497 TBXAS1P24557 533 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms