RNA–Protein interactions for RNA: YDR457W

TOM1, Transcript of E3 ubiquitin ligase of the hect-domain class, yeast

Gene TOM1, Length 9,807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TOM1	YDR457W	YIL177C	P40434	1758 aa		1.73	□□□□□ -2.13
TOM1	YDR457W	YJL225C	P40889	1758 aa		1.73	□□□□□ -2.13
TOM1	YDR457W	SEC7	P11075	2009 aa	Known RBP	1.72	□□□□□ -2.13
TOM1	YDR457W	UTP10	P42945	1769 aa	Known RBP	1.72	□□□□□ -2.13
TOM1	YDR457W	FKS3	Q04952	1785 aa		1.72	□□□□□ -2.13
TOM1	YDR457W	HFA1	P32874	2273 aa		1.71	□□□□□ -2.14
TOM1	YDR457W	TY4B-J	P47024	1803 aa		1.71	□□□□□ -2.14
TOM1	YDR457W	YLR157W-E	P0CF00	54 aa		1.7	□□□□□ -2.14
TOM1	YDR457W	RPL37A	P49166	88 aa	Known RBP	1.69	□□□□□ -2.14
TOM1	YDR457W	MEC1	P38111	2368 aa		1.69	□□□□□ -2.14
TOM1	YDR457W	PRP8	P33334	2413 aa	Known RBP	1.68	□□□□□ -2.14
TOM1	YDR457W	TOR1	P35169	2470 aa		1.67	□□□□□ -2.14
TOM1	YDR457W	YPR117W	Q06116	2489 aa		1.67	□□□□□ -2.14
TOM1	YDR457W	RPS29B	P41058	56 aa	Known RBP	1.64	□□□□□ -2.15
TOM1	YDR457W	ACC1	Q00955	2233 aa	Known RBP	1.64	□□□□□ -2.15
TOM1	YDR457W	UTP20	P35194	2493 aa	Known RBP	1.64	□□□□□ -2.15
TOM1	YDR457W	MYO1	P08964	1928 aa		1.62	□□□□□ -2.15
TOM1	YDR457W	TOR2	P32600	2474 aa	Known RBP	1.62	□□□□□ -2.15
TOM1	YDR457W	PMD1	P32634	1753 aa		1.61	□□□□□ -2.15
TOM1	YDR457W	BPH1	P25356	2167 aa		1.6	□□□□□ -2.15
TOM1	YDR457W	DUR1,2	P32528	1835 aa	Known RBP	1.59	□□□□□ -2.15
TOM1	YDR457W	RPS29A	P41057	56 aa	Known RBP	1.58	□□□□□ -2.16
TOM1	YDR457W	HKR1	P41809	1802 aa		1.56	□□□□□ -2.16
TOM1	YDR457W	YDR210W	Q03482	75 aa		1.56	□□□□□ -2.16
TOM1	YDR457W	POL2	P21951	2222 aa	Known RBP	1.56	□□□□□ -2.16
TOM1	YDR457W	GSC2	P40989	1895 aa		1.55	□□□□□ -2.16
TOM1	YDR457W	URA2	P07259	2214 aa	Known RBP	1.55	□□□□□ -2.16
TOM1	YDR457W	RIF1	P29539	1916 aa		1.54	□□□□□ -2.16
TOM1	YDR457W	ECM29	P38737	1868 aa		1.53	□□□□□ -2.16
TOM1	YDR457W	SEC16	P48415	2195 aa	Known RBP	1.52	□□□□□ -2.17
TOM1	YDR457W	MOT1	P32333	1867 aa		1.52	□□□□□ -2.17
TOM1	YDR457W	FKS1	P38631	1876 aa	Known RBP	1.52	□□□□□ -2.17
TOM1	YDR457W	BRR2	P32639	2163 aa	Known RBP	1.51	□□□□□ -2.17
TOM1	YDR457W	YRF1-3	P0CX14	1859 aa		1.5	□□□□□ -2.17
TOM1	YDR457W	YRF1-7	P0CX15	1859 aa		1.5	□□□□□ -2.17
TOM1	YDR457W	YRF1-6	P53819	1859 aa		1.5	□□□□□ -2.17
TOM1	YDR457W	GLT1	Q12680	2145 aa	Known RBP	1.48	□□□□□ -2.17
TOM1	YDR457W	YBR056W-A	I2HB52	66 aa		1.46	□□□□□ -2.18
TOM1	YDR457W	BEM2	P39960	2167 aa	Known RBP	1.46	□□□□□ -2.18
TOM1	YDR457W	UBR1	P19812	1950 aa		1.44	□□□□□ -2.18
TOM1	YDR457W	UBR2	Q07963	1872 aa		1.43	□□□□□ -2.18
TOM1	YDR457W	LAA1	P39526	2014 aa		1.43	□□□□□ -2.18
TOM1	YDR457W	SLH1	P53327	1967 aa	Known RBP	1.41	□□□□□ -2.18
TOM1	YDR457W	STT4	P37297	1900 aa		1.41	□□□□□ -2.18
TOM1	YDR457W	TOM1	Q03280	3268 aa		1.4	□□□□□ -2.19
TOM1	YDR457W	CDC39	P25655	2108 aa	Known RBP	1.4	□□□□□ -2.19
TOM1	YDR457W	FMP27	Q06179	2628 aa		1.4	□□□□□ -2.19
TOM1	YDR457W	BLM10	P43583	2143 aa		1.38	□□□□□ -2.19
TOM1	YDR457W	YLR422W	Q06409	1932 aa		1.36	□□□□□ -2.19
TOM1	YDR457W	YHR086W-A	Q3E746	53 aa		1.36	□□□□□ -2.19
TOM1	YDR457W	MDN1	Q12019	4910 aa	Known RBP	1.33	□□□□□ -2.2
TOM1	YDR457W	CCH1	P50077	2039 aa		1.31	□□□□□ -2.2
TOM1	YDR457W	CYR1	P08678	2026 aa	Known RBP	1.27	□□□□□ -2.21
TOM1	YDR457W	GCN1	P33892	2672 aa	Known RBP	1.26	□□□□□ -2.21
TOM1	YDR457W	FAS1	P07149	2051 aa	Known RBP	1.21	□□□□□ -2.22
TOM1	YDR457W	VPS13	Q07878	3144 aa		1.14	□□□□□ -2.23
TOM1	YDR457W	NUM1	Q00402	2748 aa		1.11	□□□□□ -2.23
TOM1	YDR457W	TEL1	P38110	2787 aa		1.08	□□□□□ -2.24
TOM1	YDR457W	DYN1	P36022	4092 aa		0.98	□□□□□ -2.25
TOM1	YDR457W	IRA2	P19158	3079 aa		0.95	□□□□□ -2.26
TOM1	YDR457W	IRA1	P18963	3092 aa		0.93	□□□□□ -2.26
TOM1	YDR457W	CSF1	Q12150	2958 aa		0.79	□□□□□ -2.28
TOM1	YDR457W	TRA1	P38811	3744 aa		0.71	□□□□□ -2.3

Retrieved 63 of 5,963 RNA–protein pairs in 6.8 ms