RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 INPP5DQ92835 1189 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 E2F7Q96AV8 911 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SNF8Q96H20 258 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 HDHD2Q9H0R4 259 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RIBC2Q9H4K1 309 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SUGCTQ9HAC7 445 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLC12A4Q9UP95 1085 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 APOBEC2Q9Y235 224 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PPP2R2CQ9Y2T4 447 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OAS3Q9Y6K5 1087 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 C2CD3Q4AC94 2353 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 hCG_1809904A0A1W2PP81 198 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PPE2 198 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PR64 198 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 A0A1W2PRV1 198 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 DPPA5A6NC42 116 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 POC1B-GALNT4F8VUJ3 575 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KPNA4O00629 521 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TM7SF2O76062 418 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CLK1P49759 484 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLC20A2Q08357 652 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SNTA1Q13424 505 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ITGA9Q13797 1035 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 Q3C1V9 767 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CTXN3Q4LDR2 81 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FAM46CQ5VWP2 391 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RAB39BQ96DA2 213 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PLEKHA8Q96JA3 519 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PUS7LQ9H0K6 701 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SMURF1Q9HCE7 757 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM161AQ9NX61 479 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 VPS54Q9P1Q0 977 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MRPS33Q9Y291 106 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PIK3R4Q99570 1358 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC9Q6ZRR7 1453 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TET2Q6N021 2002 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM64CA6NLI5 447 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KRT36O76013 467 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OR6A2O95222 327 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ME2P23368 584 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TLX1P31314 330 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 GRIK1P39086 918 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NLRP11P59045 1033 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TUBA4AP68366 448 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ZRANB3Q5FWF4 1079 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TUBA3EQ6PEY2 450 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM65Q6PJ69 517 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KYAT3Q6YP21 454 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KCTD17Q8N5Z5 321 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PLIN2Q99541 437 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CHID1Q9BWS9 393 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 GPR88Q9GZN0 384 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC59Q9P031 241 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SNX7Q9UNH6 387 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHB14Q9Y5E9 798 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ARAP1Q96P48 1450 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NPHP4O75161 1426 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OR5H15A6NDH6 313 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OR5H14A6NHG9 310 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OR5H1A6NKK0 313 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ANGPT2O15123 496 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 NPTXRO95502 500 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MOCS2O96007 188 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MRPS22P82650 360 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 DDX39BQ13838 428 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ARMC4Q5T2S8 1044 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PLEKHA7Q6IQ23 1121 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM67Q6ZTA4 783 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LONP2Q86WA8 852 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 GPR135Q8IZ08 494 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MINDY1Q8N5J2 469 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TP53INP1Q96A56 240 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TESK2Q96S53 571 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PITPNM3Q9BZ71 974 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ANKZF1Q9H8Y5 726 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TRMT13Q9NUP7 481 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 DLGAP2Q9P1A6 1054 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LIMA1Q9UHB6 759 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 MCM8Q9UJA3 840 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CARD8Q9Y2G2 431 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ADGBQ8N7X0 1667 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 EHBP1L1Q8N3D4 1523 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CLDN3O15551 220 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RNGTTO60942 597 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 LARGE1O95461 756 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 GLP2RO95838 553 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 OR52Z1P0C646 297 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ACADSP16219 412 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RPS6P62753 249 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 BTKQ06187 659 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 TDRD10Q5VZ19 366 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 ABRAXAS1Q6UWZ7 409 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 RASSF6Q6ZTQ3 369 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CABP7Q86V35 215 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 PDCD6IPQ8WUM4 868 aaKnown RBP2.87□□□□□ -1.95
SCN1A-219ENST00000641575 FAM149B1Q96BN6 582 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 CNDP1Q96KN2 507 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SLITRK2Q9H156 845 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 KCND1Q9NSA2 647 aa2.87□□□□□ -1.95
SCN1A-219ENST00000641575 SOHLH2Q9NX45 425 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms