RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SMUG1Q53HV7 270 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 FBXO48Q5FWF7 155 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 FAM47CQ5HY64 1035 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 TOR1AIP1Q5JTV8 583 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CYP4A22Q5TCH4 519 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 EMC10Q5UCC4 262 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 SNX30Q5VWJ9 437 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 INTS3Q68E01 1043 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 ACAD10Q6JQN1 1059 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 KIAA1211LQ6NV74 962 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 SLC2A7Q6PXP3 512 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 SLC22A25Q6T423 547 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 NPNTQ6UXI9 565 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 NLRC3Q7RTR2 1065 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 RSPH3Q86UC2 560 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 FAM160B2Q86V87 743 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 MOGAT3Q86VF5 341 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CAND1Q86VP6 1230 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 CHD1LQ86WJ1 897 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 KIF18BQ86Y91 864 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 MAML2Q8IZL2 1156 aaPredicted RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 C10orf53Q8N6V4 93 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 TMEM52Q8NDY8 209 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 OR8K3Q8NH51 312 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CCDC26Q8TAB7 109 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 IFI44Q8TCB0 444 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 SLC5A11Q8WWX8 675 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 WASF1Q92558 559 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 NCLNQ969V3 563 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 RILPL2Q969X0 211 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 ZNF764Q96H86 408 aaPredicted RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 WNK4Q96J92 1243 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CMTM3Q96MX0 182 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 TM9SF2Q99805 663 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 DDX50Q9BQ39 737 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 BCL7BQ9BQE9 202 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 RIOK1Q9BRS2 568 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 REXO4Q9GZR2 422 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 NYXQ9GZU5 481 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 PAIP1Q9H074 479 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.2□□□□□ -1.9
VIM-210ENST00000637053 MMADHCQ9H3L0 296 aaPredicted RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 TASP1Q9H6P5 420 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 ANTXR1Q9H6X2 564 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 COPS7BQ9H9Q2 264 aaPredicted RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 IARS2Q9NSE4 1012 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 SNTG1Q9NSN8 517 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 DECR2Q9NUI1 292 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 SPATA6Q9NWH7 488 aaPredicted RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 HSPBP1Q9NZL4 362 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 COX16Q9P0S2 106 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 IMPACTQ9P2X3 320 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CACNG4Q9UBN1 327 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 HDAC6Q9UBN7 1215 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 IL19Q9UHD0 177 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CPSF3Q9UKF6 684 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 PCDHB10Q9UN67 800 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 AURKCQ9UQB9 309 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 CLCA2Q9UQC9 943 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 TSC22D4Q9Y3Q8 395 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 HS3ST3A1Q9Y663 406 aa3.2□□□□□ -1.9
VIM-210ENST00000637053 TDRD9Q8NDG6 1382 aaKnown RBP3.2□□□□□ -1.9
VIM-210ENST00000637053 MYO3BQ8WXR4 1341 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 GOLGA6L7A0A1B0GV03 622 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TCRBV16S1A1N1A0A5B0 115 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 POM121BA6NF01 834 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ACOD1A6NK06 481 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 LGALS16A8MUM7 142 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 RSPH10B2B2RC85 870 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 H0YIV9 168 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 STMND1H3BQB6 276 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 GTPBP1O00178 669 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 PSMD9O00233 223 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CBX4O00257 560 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TAF4O00268 1085 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SYT5O00445 386 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TRIM38O00635 465 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 PRODHO43272 600 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SMAD6O43541 496 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 TBX10O75333 385 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CAMTA2O94983 1202 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 SCGB1D1O95968 90 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 RSPH10BP0C881 870 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CSH1P0DML2 217 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CSH2P0DML3 217 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ACADMP11310 421 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 PABPC1P11940 636 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 HPGDP15428 266 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TSHRP16473 764 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 EEF1DP29692 281 aaKnown RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 ADSSP30520 456 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 ADSLP30566 484 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 AKT1P31749 480 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CSTF2P33240 577 aaKnown RBP eCLIP3.19□□□□□ -1.9
VIM-210ENST00000637053 NF2P35240 595 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 TCF7P36402 384 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 IL15P40933 162 aaPredicted RBP3.19□□□□□ -1.9
VIM-210ENST00000637053 HAAOP46952 286 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CCT8P50990 548 aa3.19□□□□□ -1.9
VIM-210ENST00000637053 CCR9P51686 369 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms