RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FAM237AA0A1B0GTK4 181 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 A0A1B0GVL5 298 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 BCLAF3A2AJT9 711 aaKnown RBP19.5■□□□□ 0.71
CLN3-241ENST00000635861 TM4SF5O14894 197 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 HOXC11O43248 304 aaPredicted RBP19.5■□□□□ 0.71
CLN3-241ENST00000635861 RHOBTB3O94955 611 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 NDST1P52848 882 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 EOGTQ5NDL2 527 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 STPG1Q5TH74 334 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 BTBD8Q5XKL5 378 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 INTS8Q75QN2 995 aaKnown RBP19.5■□□□□ 0.71
CLN3-241ENST00000635861 PNPLA8Q9NP80 782 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 ARHGEF4Q9NR80 690 aa19.5■□□□□ 0.71
CLN3-241ENST00000635861 TLR8Q9NR97 1041 aaKnown RBP19.5■□□□□ 0.71
CLN3-241ENST00000635861 CHORDC1Q9UHD1 332 aaPredicted RBP19.5■□□□□ 0.71
CLN3-241ENST00000635861 MAP1BP46821 2468 aaKnown RBP19.49■□□□□ 0.71
CLN3-241ENST00000635861 GBP1P32455 592 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 PIK3CAP42336 1068 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 SYKP43405 635 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 ASPAP45381 313 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 INCA1Q0VD86 236 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 LY6G5CQ5SRR4 150 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 CEP135Q66GS9 1140 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 ANO7Q6IWH7 933 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 TRMT11Q7Z4G4 463 aaKnown RBP19.49■□□□□ 0.71
CLN3-241ENST00000635861 ZMIZ2Q8NF64 920 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 OLIG1Q8TAK6 271 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 SLC2A14Q8TDB8 520 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 FAXDC2Q96IV6 333 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 SMOQ99835 787 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 NACA2Q9H009 215 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 CCSER2Q9H7U1 834 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 CYP3A43Q9HB55 503 aa19.49■□□□□ 0.71
CLN3-241ENST00000635861 CAVIN2O95810 425 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 FAM200BP0CF97 657 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 CHRM1P11229 460 aaPredicted RBP19.48■□□□□ 0.71
CLN3-241ENST00000635861 RPL13P26373 211 aaKnown RBP19.48■□□□□ 0.71
CLN3-241ENST00000635861 KIR2DL1P43626 348 aaPredicted RBP19.48■□□□□ 0.71
CLN3-241ENST00000635861 SLC6A11P48066 632 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 VAMP7P51809 220 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 CREB5Q02930 508 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 GOLGA8FQ08AF8 430 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 GOLGA8DPQ0D2H9 430 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 BYSLQ13895 437 aaKnown RBP19.48■□□□□ 0.71
CLN3-241ENST00000635861 CCDC6Q16204 474 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 ETFBKMTQ8IXQ9 262 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 IL17RCQ8NAC3 791 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 MDGA1Q8NFP4 955 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 WHAMMQ8TF30 809 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 CNTNAP3BQ96NU0 1288 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 HNRNPABQ99729 332 aaKnown RBP19.48■□□□□ 0.71
CLN3-241ENST00000635861 CNTNAP3Q9BZ76 1288 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 SPHK2Q9NRA0 654 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 GMIPQ9P107 970 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 PCDHA5Q9Y5H7 936 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 ATP6V1DQ9Y5K8 247 aa19.48■□□□□ 0.71
CLN3-241ENST00000635861 DCLK1O15075 740 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 TLR5O60602 858 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 HLA-DRAP01903 254 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 CCDC130P13994 396 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 SPDYCQ5MJ68 293 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 RNF43Q68DV7 783 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 KLHDC10Q6PID8 442 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 HTR3DQ70Z44 454 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 C12orf40Q86WS4 652 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 PHTF2Q8N3S3 785 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 CCDC33Q8N5R6 958 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 ALLCQ8N6M5 410 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 TXNDC5Q8NBS9 432 aaKnown RBP19.47■□□□□ 0.71
CLN3-241ENST00000635861 SPACA7Q96KW9 195 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 LSM14BQ9BX40 385 aaKnown RBP19.47■□□□□ 0.71
CLN3-241ENST00000635861 TPSD1Q9BZJ3 242 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 CYLDQ9NQC7 956 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 RXFP3Q9NSD7 469 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 DEC1Q9P2X7 70 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 SCML2Q9UQR0 700 aa19.47■□□□□ 0.71
CLN3-241ENST00000635861 KLF8O95600 359 aaPredicted RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 KRT13P13646 458 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 NR2F2P24468 414 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 TIE1P35590 1138 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 DPP6P42658 865 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 MAP3K7CLP57077 242 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 MCCD1P59942 119 aaPredicted RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 C1orf220Q5T0J3 134 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 TMEM92Q6UXU6 159 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 GUF1Q8N442 669 aaKnown RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 TTC39CQ8N584 583 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 CCDC150Q8NCX0 1101 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 CCDC34Q96HJ3 373 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 EDEM2Q9BV94 578 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 NT5C1AQ9BXI3 368 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 SCAND2PQ9GZW5 306 aaPredicted RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 FAM124BQ9H5Z6 455 aaPredicted RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 LSM7Q9UK45 103 aaKnown RBP19.46■□□□□ 0.71
CLN3-241ENST00000635861 GON4LQ3T8J9 2241 aa19.46■□□□□ 0.71
CLN3-241ENST00000635861 A0A1W2PQ27 194 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 A0A1W2PQ64 194 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 A0A1W2PQD8 194 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 SGK1O00141 431 aa19.45■□□□□ 0.7
CLN3-241ENST00000635861 TULP3O75386 442 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 237.4 ms