RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ASTLQ6HA08 431 aaPredicted RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 SIX6OS1Q8N1H7 587 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 KIAA1958Q8N8K9 716 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 SECISBP2LQ93073 1101 aaKnown RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 ZFYVE19Q96K21 471 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 PCMTD1Q96MG8 357 aaPredicted RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 CDK5RAP1Q96SZ6 601 aaKnown RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 TBC1D17Q9HA65 648 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 CYLDQ9NQC7 956 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 CLIC5Q9NZA1 410 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 AJAP1Q9UKB5 411 aaPredicted RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 DAAM1Q9Y4D1 1078 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 FHOD1Q9Y613 1164 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 CPQQ9Y646 472 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 MYOFQ9NZM1 2061 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 COL4A2P08572 1712 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 A0A1W2PQH9 124 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 ATP1A3P13637 1013 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 ATP5C1P36542 298 aaKnown RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 PDGFRLQ15198 375 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 PM20D1Q6GTS8 502 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 FAM71AQ8IYT1 594 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 HSFY1Q96LI6 401 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 FAM83CQ9BQN1 747 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 STK33Q9BYT3 514 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 SMPD4Q9NXE4 827 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 KMT2EQ8IZD2 1858 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 LEFTY2O00292 366 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 MAN2B1O00754 1011 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 RARGP13631 454 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 PGFP49763 221 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 KPNA1P52294 538 aaPredicted RBP21.77■■□□□ 1.08
CLN3-240ENST00000631023 ADIGQ0VDE8 80 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 NFKBIBQ15653 356 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 FILIP1LQ4L180 1135 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 PMF1Q6P1K2 205 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 C1orf228Q6PIY5 440 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 TPRG1Q6ZUI0 275 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 ZNF276Q8N554 614 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 MSANTD3Q96H12 275 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 NELL2Q99435 816 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 NAA15Q9BXJ9 866 aaKnown RBP21.77■■□□□ 1.08
CLN3-240ENST00000631023 NMUR1Q9HB89 426 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 CNGB3Q9NQW8 809 aa21.77■■□□□ 1.08
CLN3-240ENST00000631023 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.77■■□□□ 1.08
CLN3-240ENST00000631023 DUS2Q9NX74 493 aaKnown RBP21.77■■□□□ 1.08
CLN3-240ENST00000631023 IFNAR2P48551 515 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 SYCP1Q15431 976 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 ITPRIPL2Q3MIP1 535 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 IER5LQ5T953 404 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 KLHDC10Q6PID8 442 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 ZNF852Q6ZMS4 543 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 APTXQ7Z2E3 356 aaKnown RBP21.76■■□□□ 1.07
CLN3-240ENST00000631023 SCD5Q86SK9 330 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 OSCP1Q8WVF1 389 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 ERGIC2Q96RQ1 377 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 ULBP1Q9BZM6 244 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 C8orf33Q9H7E9 229 aaPredicted RBP21.76■■□□□ 1.07
CLN3-240ENST00000631023 CBX8Q9HC52 389 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 ACP6Q9NPH0 428 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 FAM207AQ9NSI2 230 aaPredicted RBP21.76■■□□□ 1.07
CLN3-240ENST00000631023 OSER1Q9NX31 292 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 DNMT3LQ9UJW3 386 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 SIK3Q9Y2K2 1263 aa21.76■■□□□ 1.07
CLN3-240ENST00000631023 MRPS17Q9Y2R5 130 aaKnown RBP21.76■■□□□ 1.07
CLN3-240ENST00000631023 KANSL1LA0AUZ9 987 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 SLC9A3R1O14745 358 aaPredicted RBP21.75■■□□□ 1.07
CLN3-240ENST00000631023 LCP1P13796 627 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 AVPR2P30518 371 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 CLCN1P35523 988 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 KRT9P35527 623 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 GPD2P43304 727 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 RGS7P49802 495 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 YWHAGP61981 247 aaKnown RBP eCLIP21.75■■□□□ 1.07
CLN3-240ENST00000631023 ZXDBP98169 803 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 GOLGA8FQ08AF8 430 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 GOLGA8DPQ0D2H9 430 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 RUNX3Q13761 415 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 C10orf120Q5SQS8 335 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 SCML4Q8N228 414 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 NEK11Q8NG66 645 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 RIN3Q8TB24 985 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 DDX23Q9BUQ8 820 aaKnown RBP21.75■■□□□ 1.07
CLN3-240ENST00000631023 GANQ9H2C0 597 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 GTSE1Q9NYZ3 720 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 PIAS3Q9Y6X2 628 aa21.75■■□□□ 1.07
CLN3-240ENST00000631023 GOLGA6L19H0YKK7 550 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 AOC1P19801 751 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 ACADSBP45954 432 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 KLK7P49862 253 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 POLR2FP61218 127 aaKnown RBP21.74■■□□□ 1.07
CLN3-240ENST00000631023 TNK2Q07912 1038 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 CWF19L1Q69YN2 538 aaKnown RBP21.74■■□□□ 1.07
CLN3-240ENST00000631023 DENND1BQ6P3S1 775 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 STK32AQ8WU08 396 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 ATP2A3Q93084 1043 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 EBF3Q9H4W6 596 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 ST7Q9NRC1 585 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 CFAP97Q9P2B7 532 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 PCDHGC3Q9UN70 934 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms