RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PPP3CCP48454 512 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 DAOAP59103 153 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 PTP4A2Q12974 167 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 SMAD2Q15796 467 aaKnown RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 PUS10Q3MIT2 529 aaKnown RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 SNX30Q5VWJ9 437 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 VPS36Q86VN1 386 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 IPO4Q8TEX9 1081 aaKnown RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 GCNAQ96QF7 691 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 TAS2R14Q9NYV8 317 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 NENFQ9UMX5 172 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 MRPS23Q9Y3D9 190 aaKnown RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 DENND4CQ5VZ89 1909 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 C5orf42Q9H799 3197 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 ZNF840PA6NDX5 716 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 GOLGA6L6A8MZA4 724 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 NSFP46459 744 aaKnown RBP20.71■□□□□ 0.91
UPF3A-211ENST00000618700 PGFP49763 221 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 CYP4F8P98187 520 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 PTCRAQ6ISU1 281 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-211ENST00000618700 MON1BQ7L1V2 547 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 SCD5Q86SK9 330 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 ERICH1Q86X53 443 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 PHF13Q86YI8 300 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-211ENST00000618700 CLEC4CQ8WTT0 213 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 ATXN2LQ8WWM7 1075 aaKnown RBP20.71■□□□□ 0.91
UPF3A-211ENST00000618700 IRGQQ8WZA9 623 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 NMUR1Q9HB89 426 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 SCUBE2Q9NQ36 999 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 TRPM5Q9NZQ8 1165 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 ADAMTS1Q9UHI8 967 aa20.71■□□□□ 0.91
UPF3A-211ENST00000618700 ANAPC1Q9H1A4 1944 aa20.7■□□□□ 0.91
UPF3A-211ENST00000618700 A0A087X0T9 212 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 FAM170AA1A519 330 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 SART1O43290 800 aaKnown RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 FAM228BP0C875 321 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 GZMAP12544 262 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 GJA1P17302 382 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 GSDMDP57764 484 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 SNX16P57768 344 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 MRPS5P82675 430 aaKnown RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 TEAD2Q15562 447 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 ACAD10Q6JQN1 1059 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 PPP1R2P3Q6NXS1 205 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 OLFML1Q6UWY5 402 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 MMS22LQ6ZRQ5 1243 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 GET4Q7L5D6 327 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 MON1AQ86VX9 555 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 SCUBE3Q8IX30 993 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 NPAS3Q8IXF0 933 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 MSANTD4Q8NCY6 345 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 ING5Q8WYH8 240 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 NDRG1Q92597 394 aaKnown RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 PIWIL1Q96J94 861 aaKnown RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 MIS12Q9H081 205 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 ATXN3LQ9H3M9 355 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 NHEJ1Q9H9Q4 299 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 TLR8Q9NR97 1041 aaKnown RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 OSER1Q9NX31 292 aa20.7■□□□□ 0.9
UPF3A-211ENST00000618700 CHORDC1Q9UHD1 332 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-211ENST00000618700 A0A1W2PQH9 124 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 TUBP50607 506 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 GSCP56915 257 aaPredicted RBP20.69■□□□□ 0.9
UPF3A-211ENST00000618700 SLC18A3Q16572 532 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 STXBP5Q5T5C0 1151 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 FAM183BPQ6ZVS7 135 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 XYLT1Q86Y38 959 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 ZDHHC17Q8IUH5 632 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 ARHGAP18Q8N392 663 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 MRPS31Q92665 395 aaKnown RBP20.69■□□□□ 0.9
UPF3A-211ENST00000618700 FGF13Q92913 245 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 C18orf8Q96DM3 657 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 C11orf70Q9BRQ4 267 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.69■□□□□ 0.9
UPF3A-211ENST00000618700 SYNCQ9H7C4 482 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 CLIC5Q9NZA1 410 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 FAM50BQ9Y247 325 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 BOLA1Q9Y3E2 137 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 DOCK8Q8NF50 2099 aa20.69■□□□□ 0.9
UPF3A-211ENST00000618700 YJEFN3A6XGL0 299 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 SOBPA7XYQ1 873 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 E7ENQ6 273 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 OAS1P00973 400 aaKnown RBP20.68■□□□□ 0.9
UPF3A-211ENST00000618700 DDX6P26196 483 aaKnown RBP eCLIP20.68■□□□□ 0.9
UPF3A-211ENST00000618700 SCNN1AP37088 669 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 YWHAGP61981 247 aaKnown RBP eCLIP20.68■□□□□ 0.9
UPF3A-211ENST00000618700 AAK1Q2M2I8 961 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 C2CD6Q53TS8 623 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 SLC26A9Q7LBE3 791 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 TMEM139Q8IV31 216 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 PDLIM2Q96JY6 352 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 MYADMQ96S97 322 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 PHF7Q9BWX1 381 aaPredicted RBP20.68■□□□□ 0.9
UPF3A-211ENST00000618700 ISCUQ9H1K1 167 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.68■□□□□ 0.9
UPF3A-211ENST00000618700 GDE1Q9NZC3 331 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 ADAM22Q9P0K1 906 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 NAGPAQ9UK23 515 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 CDH7Q9ULB5 785 aa20.68■□□□□ 0.9
UPF3A-211ENST00000618700 C2orf78A6NCI8 922 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms