RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HSP90AA5PQ58FG0 334 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 FSCBQ5H9T9 825 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 PPP1R15BQ5SWA1 713 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 GPRASP2Q96D09 838 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 ADA2Q9NZK5 511 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 KLHL8Q9P2G9 620 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 FZD1Q9UP38 647 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 A8MXQ7 604 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 KLHL2O95198 593 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 PGM3O95394 542 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 LSM8O95777 96 aaKnown RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 T-ENOLP0DO92 83 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 SERPINB5P36952 375 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 NAMPTP43490 491 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 KLF1Q13351 362 aaPredicted RBP13.07□□□□□ -0.32
LIG1-221ENST00000613670 DBN1Q16643 649 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 ADGRD1Q6QNK2 874 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 BBS12Q6ZW61 710 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 PID1Q7Z2X4 250 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 TDRPQ86YL5 185 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 MFN1Q8IWA4 741 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 SERPINI1Q99574 410 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 PHACTR1Q9C0D0 580 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 BCAP29Q9UHQ4 241 aa13.07□□□□□ -0.32
LIG1-221ENST00000613670 APOC4-APOC2K7ER74 178 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 APOC2P02655 101 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 SUPT20HL2P0C7V6 817 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 ADORA2BP29275 332 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 ABCG1P45844 678 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 TUBP50607 506 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 SUPT20HL1Q3ZLR7 823 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 PTPN20Q4JDL3 420 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 FAM47CQ5HY64 1035 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 N4BP2L1Q5TBK1 243 aaPredicted RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 KRT80Q6KB66 452 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 NIPA1Q7RTP0 329 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 CDKL3Q8IVW4 592 aaPredicted RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 NLRP7Q8WX94 980 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 NKD2Q969F2 451 aaPredicted RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 GCNAQ96QF7 691 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 MIPEPQ99797 713 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 STX18Q9P2W9 335 aaKnown RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 CLUHO75153 1309 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 BHMG1C9JSJ3 638 aaPredicted RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 OGTO15294 1046 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 DCXO43602 365 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 LRCH4O75427 683 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 GPC4O75487 556 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 LCP1P13796 627 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 NEK3P51956 506 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 AP3M2P53677 418 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 SLC12A2P55011 1212 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 OGDHQ02218 1023 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 PTP4A2Q12974 167 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 PLEKHG4Q58EX7 1191 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 LPCAT4Q643R3 524 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 DCAF15Q66K64 600 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 PAF1Q8N7H5 531 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 BANPQ8N9N5 519 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 CNBD2Q96M20 576 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 ETAA1Q9NY74 926 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 CLIC5Q9NZA1 410 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 HMGCRP04035 888 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 CXCL8P10145 99 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 NUDT2P50583 147 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 HSD17B4P51659 736 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 ITGA9Q13797 1035 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 LRRC38Q5VT99 294 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 TTLL6Q8N841 843 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 STKLD1Q8NE28 680 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 B4GALNT2Q8NHY0 566 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 TMA16Q96EY4 203 aaKnown RBP13.06□□□□□ -0.32
LIG1-221ENST00000613670 XPNPEP1Q9NQW7 623 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 KCNK4Q9NYG8 393 aa13.06□□□□□ -0.32
LIG1-221ENST00000613670 GRIN3BO60391 1043 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 DNAJC6O75061 913 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 VNN1O95497 513 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 EFNA5P52803 228 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 RDM1Q8NG50 284 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 GDPD5Q8WTR4 605 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 TFAP2BQ92481 460 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 PPP2R3CQ969Q6 453 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 CMTM5Q96DZ9 223 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ZNF518BQ9C0D4 1074 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 DNAI2Q9GZS0 605 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ST6GALNAC4Q9H4F1 302 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 MAN1C1Q9NR34 630 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 DTNAQ9Y4J8 743 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 RIPK3Q9Y572 518 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ANKRD36CQ5JPF3 1778 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 SMAPO00193 183 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 LYPLA2O95372 231 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ATF7IP2Q5U623 682 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 GADL1Q6ZQY3 521 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 DENND1AQ8TEH3 1009 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 FAM172AQ8WUF8 416 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 TEX13BQ9BXU2 312 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 ASCC2Q9H1I8 757 aaPredicted RBP13.05□□□□□ -0.32
LIG1-221ENST00000613670 RHBDL2Q9NX52 303 aa13.05□□□□□ -0.32
LIG1-221ENST00000613670 APPL1Q9UKG1 709 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms