RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 COCHO43405 550 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 TPM3P06753 285 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 ALADP13716 330 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 PSMC3P17980 439 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 PSEN1P49768 467 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 PDCLQ13371 301 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 MFSD6LQ8IWD5 586 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 UBALD2Q8IYN6 164 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 NDRG1Q92597 394 aaKnown RBP17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 EDEM3Q9BZQ6 932 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 KIF9Q9HAQ2 790 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 NAGPAQ9UK23 515 aa17.39■□□□□ 0.37
CCDC28A-202ENST00000611852 DLL1O00548 723 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 CBFA2T2O43439 604 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 TLR5O60602 858 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 MMEP08473 750 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ACADSBP45954 432 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 DAOAP59103 153 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 SLC7A9P82251 487 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ZXDAP98168 799 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ARID5AQ03989 594 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 FCHO2Q0JRZ9 810 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 GRM2Q14416 872 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 TMEM110Q86TL2 294 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ZNF677Q86XU0 584 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ARHGAP18Q8N392 663 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 C1orf131Q8NDD1 294 aaKnown RBP17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 SLC20A1Q8WUM9 679 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 DEPDC1BQ8WUY9 529 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 NUP58Q9BVL2 599 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 PDCL3Q9H2J4 239 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 CLIC5Q9NZA1 410 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 ARHGAP26Q9UNA1 814 aa17.38■□□□□ 0.37
CCDC28A-202ENST00000611852 LRRC53A6NM62 1247 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 YJEFN3A6XGL0 299 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 E7ENQ6 273 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 SRFP11831 508 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 RARGP13631 454 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CDH5P33151 784 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 YWHAGP61981 247 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 GPC5P78333 572 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 ZXDBP98169 803 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CDR2Q01850 454 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 SCUBE3Q8IX30 993 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 ZNF276Q8N554 614 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 RIN3Q8TB24 985 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 BPIFB1Q8TDL5 484 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CLEC4CQ8WTT0 213 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 EDAQ92838 391 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CPXM1Q96SM3 734 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 TRMT61BQ9BVS5 477 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CEP83Q9Y592 693 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CPQQ9Y646 472 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 TRIOO75962 3097 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 HELZP42694 1942 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 E5RJQ4 531 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 FBXO21O94952 628 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 TBX18O95935 607 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 MBL2P11226 248 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 FERP16591 822 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 CHRNB2P17787 502 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 FMO1Q01740 532 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 ZNF77Q15935 545 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 KLHDC10Q6PID8 442 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 IRF2BP2Q7Z5L9 587 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 TMEM35BQ8NCS4 154 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 IRGQQ8WZA9 623 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 PPP1R13BQ96KQ4 1090 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 NOX5Q96PH1 765 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 MIS12Q9H081 205 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 EPHX3Q9H6B9 360 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 SLC2A4RGQ9NR83 387 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 SMPD4Q9NXE4 827 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 TJP2Q9UDY2 1190 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 NUDT5Q9UKK9 219 aa17.37■□□□□ 0.37
CCDC28A-202ENST00000611852 ITIH6Q6UXX5 1313 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 A0A1W2PQJ5 194 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 PAPSS1O43252 624 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 AP5Z1O43299 807 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 LSM8O95777 96 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 CCDC172P0C7W6 258 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 RALAP11233 206 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 TCF3P15923 654 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 ATP5C1P36542 298 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 PLCB2Q00722 1185 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 USP4Q13107 963 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 GSE1Q14687 1217 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 BSPRYQ5W0U4 402 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 SARM1Q6SZW1 724 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 HFE2Q6ZVN8 426 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 FMNL3Q8IVF7 1028 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 SH3RF2Q8TEC5 729 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 IQCDQ96DY2 449 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 ZFRQ96KR1 1074 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 CDK5RAP1Q96SZ6 601 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 NACA2Q9H009 215 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 AIPL1Q9NZN9 384 aa17.36■□□□□ 0.37
CCDC28A-202ENST00000611852 GYPCP04921 128 aa17.35■□□□□ 0.37
CCDC28A-202ENST00000611852 GDI1P31150 447 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms