RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 NELL2Q99435 816 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 CRACR2AQ9BSW2 395 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 RNF38Q9H0F5 515 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 CHRDQ9H2X0 955 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 EBF3Q9H4W6 596 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 C8orf33Q9H7E9 229 aaPredicted RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 KIF9Q9HAQ2 790 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 LMAN1LQ9HAT1 526 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 FAM207AQ9NSI2 230 aaPredicted RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 FAM49BQ9NUQ9 324 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 SPATA6Q9NWH7 488 aaPredicted RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 CAPN11Q9UMQ6 739 aa12.21□□□□□ -0.45
LINC00539-204ENST00000608957 MRPS17Q9Y2R5 130 aaKnown RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 MYO18AQ92614 2054 aaKnown RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 RIF1Q5UIP0 2472 aaKnown RBP12.21□□□□□ -0.45
LINC00539-204ENST00000608957 ZFHX2Q9C0A1 2572 aaPredicted RBP12.2□□□□□ -0.46
LINC00539-204ENST00000608957 TRAV19A0A0A6YYK7 116 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 ZNF840PA6NDX5 716 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PMM2O15305 246 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 GFRA3O60609 400 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 USP17L7P0C7H9 530 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 TDGF1P13385 188 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PON1P27169 355 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 HOXC13P31276 330 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 GTF2H1P32780 548 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 KRT9P35527 623 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PGFP49763 221 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 CETN1Q12798 172 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 IFRD2Q12894 506 aaPredicted RBP12.2□□□□□ -0.46
LINC00539-204ENST00000608957 TAF10Q12962 218 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 MTF1Q14872 753 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PON2Q15165 354 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 KRT39Q6A163 491 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 TSSK4Q6SA08 328 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 Q6ZS52 159 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 ZSCAN30Q86W11 494 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 UNC93AQ86WB7 457 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 SLC2A14Q8TDB8 520 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 SH3RF2Q8TEC5 729 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 TATDN2Q93075 761 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PANX2Q96RD6 677 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 MED10Q9BTT4 135 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 GANQ9H2C0 597 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PLCB1Q9NQ66 1216 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PRMT8Q9NR22 394 aaPredicted RBP12.2□□□□□ -0.46
LINC00539-204ENST00000608957 KRT82Q9NSB4 513 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 ABHD10Q9NUJ1 306 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 C2orf42Q9NWW7 574 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 IL37Q9NZH6 218 aa12.2□□□□□ -0.46
LINC00539-204ENST00000608957 LUC7L2Q9Y383 392 aaKnown RBP12.2□□□□□ -0.46
LINC00539-204ENST00000608957 PTPRZ1P23471 2315 aaPredicted RBP12.2□□□□□ -0.46
LINC00539-204ENST00000608957 OTOGLQ3ZCN5 2332 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 HHLA1C9JL84 531 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 EPHB6O15197 1021 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 NCAM2O15394 837 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 LAMTOR5O43504 91 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 CILPO75339 1184 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 AP1G2O75843 785 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 OLFM2O95897 454 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 OAS1P00973 400 aaKnown RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 CKMP06732 381 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 P4HA1P13674 534 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 TCF3P15923 654 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 HDCP19113 662 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 CD58P19256 250 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 SLC5A3P53794 718 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 ZBED6P86452 979 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 CSTF1Q05048 431 aaKnown RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 RUNX3Q13761 415 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 ITPRIPL2Q3MIP1 535 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 GPRIN1Q7Z2K8 1008 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 RALGPS2Q86X27 583 aaPredicted RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 NUP93Q8N1F7 819 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 ZNF397Q8NF99 534 aaPredicted RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 NELL1Q92832 810 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 SMARCD1Q96GM5 515 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 MSANTD3Q96H12 275 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 TNIP3Q96KP6 325 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 ARID3AQ99856 593 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 EDEM3Q9BZQ6 932 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 NIF3L1Q9GZT8 377 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 INTS2Q9H0H0 1204 aaKnown RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 LINC00597Q9H2U6 94 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 CSNK1G1Q9HCP0 422 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 DMAP1Q9NPF5 467 aaPredicted RBP12.19□□□□□ -0.46
LINC00539-204ENST00000608957 TRPM5Q9NZQ8 1165 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 ARHGAP26Q9UNA1 814 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 WNT6Q9Y6F9 365 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 SPAG17Q6Q759 2223 aa12.19□□□□□ -0.46
LINC00539-204ENST00000608957 RALGAPA1Q6GYQ0 2036 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 ATP8B3O60423 1300 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FAM92AA1XBS5 289 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 RNF225M0QZC1 329 aaPredicted RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 LEFTY2O00292 366 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 SKILP12757 684 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 SLC9A1P19634 815 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 FECHP22830 423 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 MSNP26038 577 aaKnown RBP12.18□□□□□ -0.46
LINC00539-204ENST00000608957 YWHAQP27348 245 aa12.18□□□□□ -0.46
LINC00539-204ENST00000608957 ADORA2BP29275 332 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms