RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TRPC7Q9HCX4 862 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 CD320Q9NPF0 282 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 CLIC5Q9NZA1 410 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 IGSF9Q9P2J2 1179 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 A0A1W2PQH9 124 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 E5RJQ4 531 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 PIK3R2O00459 728 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 HDCP19113 662 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 FCARP24071 287 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 NOMO3P69849 1222 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 HECTD3Q5T447 861 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 PARM1Q6UWI2 310 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 ZNF276Q8N554 614 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 ARL14EPQ8N8R7 260 aaPredicted RBP20.32■□□□□ 0.84
UPF1-209ENST00000600310 FGF14Q92915 247 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 PCDHB18PQ96TA0 734 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 ZFP14Q9HCL3 533 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 OSER1Q9NX31 292 aa20.32■□□□□ 0.84
UPF1-209ENST00000600310 PAPSS1O43252 624 aaPredicted RBP20.31■□□□□ 0.84
UPF1-209ENST00000600310 ECI2O75521 394 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 AVPR1AP37288 418 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 SNX16P57768 344 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 YWHAGP61981 247 aaKnown RBP eCLIP20.31■□□□□ 0.84
UPF1-209ENST00000600310 KLHL30Q0D2K2 578 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 TBX2Q13207 712 aaPredicted RBP20.31■□□□□ 0.84
UPF1-209ENST00000600310 PTPN20Q4JDL3 420 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 NAA35Q5VZE5 725 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 TANGO2Q6ICL3 276 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 TMC6Q7Z403 805 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 RNF135Q8IUD6 432 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 SCUBE3Q8IX30 993 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 E2F7Q96AV8 911 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 ELSPBP1Q96BH3 223 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 SLC22A12Q96S37 553 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 CYP2S1Q96SQ9 504 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 MIS12Q9H081 205 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 RNF38Q9H0F5 515 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 HAUS4Q9H6D7 363 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 KCNK12Q9HB15 430 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.31■□□□□ 0.84
UPF1-209ENST00000600310 NAGPAQ9UK23 515 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 NUMBLQ9Y6R0 609 aa20.31■□□□□ 0.84
UPF1-209ENST00000600310 YJEFN3A6XGL0 299 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 E7ENQ6 273 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 SART1O43290 800 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 COCHO43405 550 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 TLR5O60602 858 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 CKMP06732 381 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 ASGR2P07307 311 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 TPM1P09493 284 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 RALAP11233 206 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 UNGP13051 313 aaPredicted RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 RARGP13631 454 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 HNRNPH3P31942 346 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 SLC7A9P82251 487 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 ZNF268Q14587 947 aaPredicted RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 ARID5BQ14865 1188 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 BSPRYQ5W0U4 402 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 KLHDC10Q6PID8 442 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 ST13P5Q8NFI4 369 aaPredicted RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 IPO4Q8TEX9 1081 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 RSAD2Q8WXG1 361 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 USP13Q92995 863 aaPredicted RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 RPP25Q9BUL9 199 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 CCSER2Q9H7U1 834 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 OBP2AQ9NY56 170 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 TJP2Q9UDY2 1190 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 ARHGAP26Q9UNA1 814 aa20.3■□□□□ 0.84
UPF1-209ENST00000600310 BZW2Q9Y6E2 419 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 ZNF638Q14966 1978 aaKnown RBP20.3■□□□□ 0.84
UPF1-209ENST00000600310 PRAMEF12O95522 483 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 ERBB2P04626 1255 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 SKILP12757 684 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 TNFAIP3P21580 790 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 VIPR2P41587 438 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 GABRB2P47870 512 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 CLEC16AQ2KHT3 1053 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 HGSNATQ68CP4 663 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 ZNF571Q7Z3V5 609 aaPredicted RBP20.29■□□□□ 0.84
UPF1-209ENST00000600310 ERICH1Q86X53 443 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 CELF5Q8N6W0 485 aaKnown RBP20.29■□□□□ 0.84
UPF1-209ENST00000600310 OR8K1Q8NGG5 319 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 OLIG1Q8TAK6 271 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 CLEC4CQ8WTT0 213 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 CPA5Q8WXQ8 436 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 KXD1Q9BQD3 176 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 SMG9Q9H0W8 520 aaKnown RBP20.29■□□□□ 0.84
UPF1-209ENST00000600310 KIF9Q9HAQ2 790 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 TDP1Q9NUW8 608 aa20.29■□□□□ 0.84
UPF1-209ENST00000600310 HEPACAM2A8MVW5 462 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 SERPING1P05155 500 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 ATP5C1P36542 298 aaKnown RBP20.28■□□□□ 0.84
UPF1-209ENST00000600310 BTBD8Q5XKL5 378 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 HFE2Q6ZVN8 426 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 TADA2BQ86TJ2 420 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 ZDHHC17Q8IUH5 632 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 SLC44A3Q8N4M1 653 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 MSANTD4Q8NCY6 345 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 C18orf8Q96DM3 657 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 RSPRY1Q96DX4 576 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms