RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 IFRD2Q12894 506 aaPredicted RBP17.06■□□□□ 0.32
LSM4-206ENST00000600289 MTF1Q14872 753 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 MEA1Q16626 185 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 GOLGA7BQ2TAP0 167 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 KLHL40Q2TBA0 621 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 PKDCCQ504Y2 493 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 LCLAT1Q6UWP7 414 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 CCDC186Q7Z3E2 898 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 TTC30AQ86WT1 665 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 ZNF276Q8N554 614 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 RBBP8NLQ8NC74 664 aaPredicted RBP17.06■□□□□ 0.32
LSM4-206ENST00000600289 PJA1Q8NG27 643 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 RIN3Q8TB24 985 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 CSGALNACT1Q8TDX6 532 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 CYP2S1Q96SQ9 504 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 CRACR2AQ9BSW2 395 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 TLR8Q9NR97 1041 aaKnown RBP17.06■□□□□ 0.32
LSM4-206ENST00000600289 HEBP1Q9NRV9 189 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 GMIPQ9P107 970 aa17.06■□□□□ 0.32
LSM4-206ENST00000600289 RNF225M0QZC1 329 aaPredicted RBP17.05■□□□□ 0.32
LSM4-206ENST00000600289 MAN2B1O00754 1011 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 SETSIPP0DME0 302 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 CD19P15391 556 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 PLA2G4AP47712 749 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 MFAP3P55082 362 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 MYL5Q02045 173 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 TYRO3Q06418 890 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 PDGFRLQ15198 375 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 CNGA2Q16280 664 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 HECTD3Q5T447 861 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 TPRG1Q6ZUI0 275 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 PIGZQ86VD9 579 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 GPIHBP1Q8IV16 184 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 SUMF1Q8NBK3 374 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 NELL2Q99435 816 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 BPIFA3Q9BQP9 254 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 RNF38Q9H0F5 515 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 C8orf33Q9H7E9 229 aaPredicted RBP17.05■□□□□ 0.32
LSM4-206ENST00000600289 SIX2Q9NPC8 291 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 UBE2TQ9NPD8 197 aaPredicted RBP17.05■□□□□ 0.32
LSM4-206ENST00000600289 CYLDQ9NQC7 956 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 HESX1Q9UBX0 185 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.05■□□□□ 0.32
LSM4-206ENST00000600289 FRYQ5TBA9 3013 aa17.05■□□□□ 0.32
LSM4-206ENST00000600289 ADRB1P08588 477 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 MAGEA9P43362 315 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 ZXDBP98169 803 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 PDE4CQ08493 712 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 DPY19L2P1Q6NXN4 242 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 CAVIN1Q6NZI2 390 aaKnown RBP17.04■□□□□ 0.32
LSM4-206ENST00000600289 KLHDC10Q6PID8 442 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 ZNF852Q6ZMS4 543 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 DDX42Q86XP3 938 aaKnown RBP eCLIP17.04■□□□□ 0.32
LSM4-206ENST00000600289 ZNF687Q8N1G0 1237 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 SCML4Q8N228 414 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 SH3RF2Q8TEC5 729 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 OSCP1Q8WVF1 389 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 KCTD13Q8WZ19 329 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 TFAP2BQ92481 460 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 SHC3Q92529 594 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 ZFYVE19Q96K21 471 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 ZSWIM1Q9BR11 485 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 LTB4R2Q9NPC1 389 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 DLGAP2Q9P1A6 1054 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 CHORDC1Q9UHD1 332 aaPredicted RBP17.04■□□□□ 0.32
LSM4-206ENST00000600289 MRPS17Q9Y2R5 130 aaKnown RBP17.04■□□□□ 0.32
LSM4-206ENST00000600289 PIAS3Q9Y6X2 628 aa17.04■□□□□ 0.32
LSM4-206ENST00000600289 SPEGQ15772 3267 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 FASNP49327 2511 aaKnown RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 LEFTY2O00292 366 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 CYP26A1O43174 497 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 COCHO43405 550 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 RFX1P22670 979 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 NCAPHQ15003 741 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 ITPRIPL2Q3MIP1 535 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 HSP90AA4PQ58FG1 418 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 PM20D1Q6GTS8 502 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 CC2D1AQ6P1N0 951 aaPredicted RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 RALGPS2Q86X27 583 aaPredicted RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 ZFRQ96KR1 1074 aaKnown RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 FOXQ1Q9C009 403 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 NAT10Q9H0A0 1025 aaKnown RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 HPS4Q9NQG7 708 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 FANCLQ9NW38 375 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 CLIC5Q9NZA1 410 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 SIT1Q9Y3P8 196 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 CPQQ9Y646 472 aa17.03■□□□□ 0.32
LSM4-206ENST00000600289 ANKRD11Q6UB99 2663 aaPredicted RBP17.03■□□□□ 0.32
LSM4-206ENST00000600289 TLR5O60602 858 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 LETM1O95202 739 aaPredicted RBP17.02■□□□□ 0.32
LSM4-206ENST00000600289 ABL1P00519 1130 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 HOXB3P14651 431 aaPredicted RBP17.02■□□□□ 0.32
LSM4-206ENST00000600289 ZNF18P17022 549 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 PGFP49763 221 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 KCNMA1Q12791 1236 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 RUNX3Q13761 415 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 KRT31Q15323 416 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 GJB7Q6PEY0 223 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 ARHGAP18Q8N392 663 aa17.02■□□□□ 0.32
LSM4-206ENST00000600289 SLC35F5Q8WV83 523 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms