RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CHFRQ96EP1 664 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 ZFYVE19Q96K21 471 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 LRFN3Q9BTN0 628 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 DDX23Q9BUQ8 820 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 C1QTNF1Q9BXJ1 281 aa20.53■□□□□ 0.88
SHKBP1-221ENST00000599833 PRR33A8MZF0 331 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 THAP12O43422 761 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 TBX18O95935 607 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 CKMP06732 381 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 PBX1P40424 430 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 RGS7P49802 495 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 ADIGQ0VDE8 80 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 RAPGEF1Q13905 1077 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 NR1I3Q14994 352 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 HECTD3Q5T447 861 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 ZNF687Q8N1G0 1237 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 ANKRD20A12PQ8NF67 263 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 SH3RF2Q8TEC5 729 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 CLEC4CQ8WTT0 213 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 SLC4A5Q9BY07 1137 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 HPS4Q9NQG7 708 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 TLR8Q9NR97 1041 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 TJP2Q9UDY2 1190 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 CPQQ9Y646 472 aa20.52■□□□□ 0.88
SHKBP1-221ENST00000599833 MYO15AQ9UKN7 3530 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 OTOL1A6NHN0 477 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 YJEFN3A6XGL0 299 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 E7ENQ6 273 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 LEFTY2O00292 366 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 TLR5O60602 858 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 ZBED1O96006 694 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 ABL1P00519 1130 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 TPM2P07951 284 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 CYP11B1P15538 503 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 USP8P40818 1118 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 DAOAP59103 153 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 ZNF445P59923 1031 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 POLR2FP61218 127 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 SIX5Q8N196 739 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 EPS8L1Q8TE68 723 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 STK32AQ8WU08 396 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 HSFY1Q96LI6 401 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 ARHGEF3Q9NR81 526 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 CLIC5Q9NZA1 410 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 CA14Q9ULX7 337 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 DAAM1Q9Y4D1 1078 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 VPS13AQ96RL7 3174 aa20.51■□□□□ 0.87
SHKBP1-221ENST00000599833 RARGP13631 454 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 PDE6CP51160 858 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 STARD6P59095 220 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 FANCCQ00597 558 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 TNK2Q07912 1038 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 MTF1Q14872 753 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 ARHGAP29Q52LW3 1261 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 SLC44A4Q53GD3 710 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 TMEM31Q5JXX7 168 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 TRIM68Q6AZZ1 485 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 KLHDC10Q6PID8 442 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 NOP9Q86U38 636 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 OLIG1Q8TAK6 271 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 BAP1Q92560 729 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 KLF16Q9BXK1 252 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 TTYH3Q9C0H2 523 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 LHX5Q9H2C1 402 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 NLRC4Q9NPP4 1024 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 CNGB3Q9NQW8 809 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 HEBP1Q9NRV9 189 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 NOCTQ9UK39 431 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 NUDT5Q9UKK9 219 aa20.5■□□□□ 0.87
SHKBP1-221ENST00000599833 MYOFQ9NZM1 2061 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 PIK3R2O00459 728 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 DPYSL4O14531 572 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 ZNF263O14978 683 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 MDM4O15151 490 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 MED7O43513 233 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 CDH5P33151 784 aaPredicted RBP20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 SLC8A3P57103 927 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 PFKPQ01813 784 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 PTK2Q05397 1052 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 TMEM110Q86TL2 294 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 KIAA1958Q8N8K9 716 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 IRF7Q92985 503 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 BRD9Q9H8M2 597 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 GKN1Q9NS71 199 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 SMPD4Q9NXE4 827 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 NAGPAQ9UK23 515 aa20.49■□□□□ 0.87
SHKBP1-221ENST00000599833 A0A1W2PQC6 194 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 FYNP06241 537 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 MBL2P11226 248 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 LCP1P13796 627 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 CHRNB2P17787 502 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 SOX5P35711 763 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 PSEN1P49768 467 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 YWHAGP61981 247 aaKnown RBP eCLIP20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 PDCLQ13371 301 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 MLF2Q15773 248 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 EML3Q32P44 896 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 PASD1Q8IV76 773 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 NEK11Q8NG66 645 aa20.48■□□□□ 0.87
SHKBP1-221ENST00000599833 PIWIL1Q96J94 861 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms