RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 GOLPH3Q9H4A6 298 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 POPDC2Q9HBU9 364 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 RRAGDQ9NQL2 400 aaPredicted RBP16.19■□□□□ 0.18
UPF1-206ENST00000598471 RRN3Q9NYV6 651 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.19■□□□□ 0.18
UPF1-206ENST00000598471 STAP1Q9ULZ2 295 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 SCML2Q9UQR0 700 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 PATJQ8NI35 1801 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 SOAT2O75908 522 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 CSPG5O95196 566 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SEC24AO95486 1093 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 GLUD1P00367 558 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 LTFP02788 710 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 CSH1P0DML2 217 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 CSH2P0DML3 217 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 DNAJB1P25685 340 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 FLT3P36888 993 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 MATKP42679 507 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SSR1P43307 286 aaKnown RBP16.18■□□□□ 0.18
UPF1-206ENST00000598471 PTPN9P43378 593 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 EPHB3P54753 998 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 TAF12Q16514 161 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SDHAF4Q5VUM1 108 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 ELMSAN1Q6PJG2 1045 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 Q7L0L9 218 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SPRED2Q7Z698 418 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 UBL4BQ8N7F7 174 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SCAMP5Q8TAC9 235 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 ARNTL2Q8WYA1 636 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 FBXO32Q969P5 355 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 USTQ9Y2C2 406 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.18■□□□□ 0.18
UPF1-206ENST00000598471 HYOU1Q9Y4L1 999 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 INSL5Q9Y5Q6 135 aa16.18■□□□□ 0.18
UPF1-206ENST00000598471 CCDC66A2RUB6 948 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 SLC38A8A6NNN8 435 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 YJEFN3A6XGL0 299 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 HIDE1A8MVS5 230 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 E7ENQ6 273 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 ENC1O14682 589 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 TGM5O43548 720 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 ATP1A1P05023 1023 aaKnown RBP16.17■□□□□ 0.18
UPF1-206ENST00000598471 TCP1P17987 556 aaKnown RBP16.17■□□□□ 0.18
UPF1-206ENST00000598471 ATF6P18850 670 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 NOS2P35228 1153 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 PSEN1P49768 467 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 OGDHQ02218 1023 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 TUBB2AQ13885 445 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 TAF5Q15542 800 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 HADHQ16836 314 aaKnown RBP16.17■□□□□ 0.18
UPF1-206ENST00000598471 BTBD8Q5XKL5 378 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 RTL10Q7L3V2 364 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 BEND5Q7L4P6 421 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 ITIH5Q86UX2 942 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 DEFB106AQ8N104 65 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 KHSRPQ92945 711 aaKnown RBP eCLIP16.17■□□□□ 0.18
UPF1-206ENST00000598471 TIFAQ96CG3 184 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 SLITRK1Q96PX8 696 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 SLC2A13Q96QE2 648 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 DDX23Q9BUQ8 820 aaKnown RBP16.17■□□□□ 0.18
UPF1-206ENST00000598471 TUBB2BQ9BVA1 445 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 TTYH1Q9H313 450 aaPredicted RBP16.17■□□□□ 0.18
UPF1-206ENST00000598471 ABCC13Q9NSE7 274 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 IL37Q9NZH6 218 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 DPP7Q9UHL4 492 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 FBXW11Q9UKB1 542 aa16.17■□□□□ 0.18
UPF1-206ENST00000598471 FAM92AA1XBS5 289 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 PSTPIP1O43586 416 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 NCK2O43639 380 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 URI1O94763 535 aaPredicted RBP16.16■□□□□ 0.18
UPF1-206ENST00000598471 LRG1P02750 347 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 CTNNA2P26232 953 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 YWHAGP61981 247 aaKnown RBP eCLIP16.16■□□□□ 0.18
UPF1-206ENST00000598471 ZNF252P-AS1Q0IIN9 211 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 PTPROQ16827 1216 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 DCAF6Q58WW2 860 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 PAPD7Q5XG87 772 aaKnown RBP16.16■□□□□ 0.18
UPF1-206ENST00000598471 CC2D1AQ6P1N0 951 aaPredicted RBP16.16■□□□□ 0.18
UPF1-206ENST00000598471 LILRA6Q6PI73 481 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 MON1AQ86VX9 555 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 RHOT1Q8IXI2 618 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 KREMEN2Q8NCW0 462 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 PDZD8Q8NEN9 1154 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 GPR152Q8TDT2 470 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 GIPC2Q8TF65 315 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 OVCA2Q8WZ82 227 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 NDRG1Q92597 394 aaKnown RBP16.16■□□□□ 0.18
UPF1-206ENST00000598471 HES6Q96HZ4 224 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 FAM161BQ96MY7 647 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 TTLL2Q9BWV7 592 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 TLR10Q9BXR5 811 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 CERS4Q9HA82 394 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 TLR8Q9NR97 1041 aaKnown RBP16.16■□□□□ 0.18
UPF1-206ENST00000598471 SNX12Q9UMY4 172 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 ASB3Q9Y575 518 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 SAR1BQ9Y6B6 198 aa16.16■□□□□ 0.18
UPF1-206ENST00000598471 NCAM1P13591 858 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 PRLRP16471 622 aa16.15■□□□□ 0.18
UPF1-206ENST00000598471 CTNNA1P35221 906 aaKnown RBP16.15■□□□□ 0.18
UPF1-206ENST00000598471 PCK1P35558 622 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms