RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 A8MXQ7 604 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 HOXC11O43248 304 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 COCHO43405 550 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 HOXD12P35452 270 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 KRT85P78386 507 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 CYP24A1Q07973 514 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 STK4Q13043 487 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TRPC3Q13507 836 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TRIM61Q5EBN2 209 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 HECTD3Q5T447 861 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 PEAR1Q5VY43 1037 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 SLC23A3Q6PIS1 610 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 NUDT18Q6ZVK8 323 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TRMT11Q7Z4G4 463 aaKnown RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 ETFBKMTQ8IXQ9 262 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TMEFF1Q8IYR6 380 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 XXYLT1Q8NBI6 393 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 B3GALNT2Q8NCR0 500 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 KIAA0895Q8NCT3 520 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 FBXO32Q969P5 355 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 SYAP1Q96A49 352 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 CCDC127Q96BQ5 260 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 ZFRQ96KR1 1074 aaKnown RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 TMEM121BQ9BXQ6 578 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 ADAM33Q9BZ11 813 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 XYLT2Q9H1B5 865 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 GOLPH3LQ9H4A5 285 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 DPEP3Q9H4B8 488 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 VRTNQ9H8Y1 702 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 IL37Q9NZH6 218 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 BCCIPQ9P287 314 aaKnown RBP eCLIP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 CGNQ9P2M7 1197 aaKnown RBP13.28□□□□□ -0.28
TRIM28-212ENST00000597995 UBE4BO95155 1302 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 FAM208BQ5VWN6 2430 aa13.28□□□□□ -0.28
TRIM28-212ENST00000597995 PLXND1Q9Y4D7 1925 aa13.27□□□□□ -0.28
TRIM28-212ENST00000597995 FAM92AA1XBS5 289 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 TBC1D3BA6NDS4 549 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 UPK3BL1B0FP48 263 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 UPK3BL2E5RIL1 263 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 CLDN5O00501 218 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 SCAMP3O14828 347 aaKnown RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 ADAM23O75077 832 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 PRR29P0C7W0 189 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 PTGER3P43115 390 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 NDUFA8P51970 172 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 MYL6P60660 151 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 IFRD2Q12894 506 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 KNOP1Q1ED39 458 aaKnown RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 UAP1L1Q3KQV9 507 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 KMT5BQ4FZB7 885 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 LYSMD4Q5XG99 296 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 BTBD8Q5XKL5 378 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 C12orf56Q8IXR9 622 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 CEP57L1Q8IYX8 460 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 CEP76Q8TAP6 659 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 ZNF516Q92618 1163 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 SLC32A1Q9H598 525 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 GDPD2Q9HCC8 539 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 TMEM74BQ9NUR3 256 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 DEC1Q9P2X7 70 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 NXF1Q9UBU9 619 aaKnown RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 CHORDC1Q9UHD1 332 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 MBD1Q9UIS9 605 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 PILRBQ9UKJ0 227 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 ZMIZ1Q9ULJ6 1067 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 CIZ1Q9ULV3 898 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-212ENST00000597995 SH3BP1Q9Y3L3 701 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 ATP8B3O60423 1300 aa13.27□□□□□ -0.29
TRIM28-212ENST00000597995 TCRBV21S2A2A0A5A6 115 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 TULP3O75386 442 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 ZDHHC11BP0C7U3 371 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 ENGP17813 658 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 CYP2J2P51589 502 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 AP3M2P53677 418 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 KDSRQ06136 332 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 DUOXA1Q1HG43 343 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 SLC36A4Q6YBV0 504 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 PGBD3Q8N328 593 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 FRMD1Q8N878 549 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 DEFB124Q8NES8 71 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 PLEKHO2Q8TD55 490 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 HMGB4Q8WW32 186 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 TNIP3Q96KP6 325 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 KCNK16Q96T55 309 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 DMAP1Q9NPF5 467 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-212ENST00000597995 SPHK2Q9NRA0 654 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 STARD13Q9Y3M8 1113 aa13.26□□□□□ -0.29
TRIM28-212ENST00000597995 CACNA1GO43497 2377 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 TNRC6BQ9UPQ9 1833 aaKnown RBP13.25□□□□□ -0.29
TRIM28-212ENST00000597995 AP5Z1O43299 807 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 PHACTR2O75167 634 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SPINK2P20155 84 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SLC5A3P53794 718 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 SEMA3BQ13214 749 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 PAQR9Q6ZVX9 377 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 ARMCX6Q7L4S7 300 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 RABEPKQ7Z6M1 372 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 PIP4P1Q86T03 277 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 FAM35AQ86V20 835 aa13.25□□□□□ -0.29
TRIM28-212ENST00000597995 TMEM25Q86YD3 366 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms