RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SMPD4Q9NXE4 827 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 STARD13Q9Y3M8 1113 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 PCDHA5Q9Y5H7 936 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 ATP6V1DQ9Y5K8 247 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 FAM200BP0CF97 657 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 PFKFB1P16118 471 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 HOXC13P31276 330 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 HOXD12P35452 270 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 KIR2DL1P43626 348 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-211ENST00000597968 SHC2P98077 582 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 DAB2IPQ5VWQ8 1189 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 RNF43Q68DV7 783 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 ETFBKMTQ8IXQ9 262 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 CCDC150Q8NCX0 1101 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 MDGA1Q8NFP4 955 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 CNTNAP3BQ96NU0 1288 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 CDK5RAP1Q96SZ6 601 aaKnown RBP14.4□□□□□ -0.1
TRIM28-211ENST00000597968 CNTNAP3Q9BZ76 1288 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 SCAND2PQ9GZW5 306 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-211ENST00000597968 NACA2Q9H009 215 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 DEC1Q9P2X7 70 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 CHORDC1Q9UHD1 332 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-211ENST00000597968 EVLQ9UI08 416 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-211ENST00000597968 SCML2Q9UQR0 700 aa14.4□□□□□ -0.1
TRIM28-211ENST00000597968 KIAA1549LQ6ZVL6 1849 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 TLR5O60602 858 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 CLSTN1O94985 981 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 CHRM1P11229 460 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 GBP1P32455 592 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 GTF2H1P32780 548 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 ATP5C1P36542 298 aaKnown RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 P2RY2P41231 377 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SYKP43405 635 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 ASPAP45381 313 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 VAMP7P51809 220 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 NDST1P52848 882 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 CREB5Q02930 508 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 IFRD2Q12894 506 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 E2F5Q15329 346 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 LY6G5CQ5SRR4 150 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 ANO7Q6IWH7 933 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 ACOT1Q86TX2 421 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 PHTF2Q8N3S3 785 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 GUF1Q8N442 669 aaKnown RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 TXNDC5Q8NBS9 432 aaKnown RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 ZMIZ2Q8NF64 920 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SCAMP5Q8TAC9 235 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SLC2A14Q8TDB8 520 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SPATA32Q96LK8 384 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 XPO6Q96QU8 1125 aaKnown RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SMOQ99835 787 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 NT5C1AQ9BXI3 368 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SDCBP2Q9H190 292 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.39□□□□□ -0.111e-9■□□□□ 8.2
TRIM28-211ENST00000597968 MARK1Q9P0L2 795 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 WDR35Q9P2L0 1181 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 LSM7Q9UK45 103 aaKnown RBP14.39□□□□□ -0.11
TRIM28-211ENST00000597968 RALGAPA1Q6GYQ0 2036 aa14.39□□□□□ -0.11
TRIM28-211ENST00000597968 SPAG17Q6Q759 2223 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 A0A1B0GVL5 298 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 A0A1W2PQ27 194 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 A0A1W2PQ64 194 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 A0A1W2PQD8 194 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 KHNYNO15037 678 aaKnown RBP14.38□□□□□ -0.11
TRIM28-211ENST00000597968 KRT13P13646 458 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 NR2F2P24468 414 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 PSMC2P35998 433 aaKnown RBP14.38□□□□□ -0.11
TRIM28-211ENST00000597968 PIK3CAP42336 1068 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 SEC13P55735 322 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 DLG4P78352 724 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 LMAN2Q12907 356 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 CEP135Q66GS9 1140 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 LPCAT2Q7L5N7 544 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 GRAMD1CQ8IYS0 662 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 ALLCQ8N6M5 410 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 TERB1Q8NA31 727 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 EDEM2Q9BV94 578 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 CCSER2Q9H7U1 834 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 GMIPQ9P107 970 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 ANGPTL2Q9UKU9 493 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 ZNF510Q9Y2H8 683 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 ZDHHC9Q9Y397 364 aa14.38□□□□□ -0.11
TRIM28-211ENST00000597968 TBC1D3BA6NDS4 549 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 ZBTB24O43167 697 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-211ENST00000597968 STX10O60499 249 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 TULP3O75386 442 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 KLF8O95600 359 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-211ENST00000597968 HLA-DRAP01903 254 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 PMLP29590 882 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 TIE1P35590 1138 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 PLA2G4AP47712 749 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 SLC6A11P48066 632 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 ZNF132P52740 706 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 MAP3K7CLP57077 242 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 EDRF1Q3B7T1 1238 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 TMEM92Q6UXU6 159 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 SLC36A4Q6YBV0 504 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 SCARA5Q6ZMJ2 495 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 CLEC20AQ6ZU45 233 aa14.37□□□□□ -0.11
TRIM28-211ENST00000597968 CYP2U1Q7Z449 544 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms