RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FAM49B	Q9NUQ9	324 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	IL37	Q9NZH6	218 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	FRY	Q5TBA9	3013 aa		11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	CNOT1	A5YKK6	2376 aa	Known RBP	11.16	□□□□□ -0.62
LSM4-205	ENST00000597776	MAP1B	P46821	2468 aa	Known RBP	11.15	□□□□□ -0.62
LSM4-205	ENST00000597776		A0A1B0GVL5	298 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	C4orf47	A7E2U8	309 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	TRIM24	O15164	1050 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	TLR5	O60602	858 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ADAM23	O75077	832 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ZDHHC11B	P0C7U3	371 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	PFKFB1	P16118	471 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	PML	P29590	882 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	GRIA2	P42262	883 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	PIK3CA	P42336	1068 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	KIR2DL1	P43626	348 aa	Predicted RBP	11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ASPA	P45381	313 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	DHPS	P49366	369 aa	Predicted RBP	11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	AP3M2	P53677	418 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	MAP3K7CL	P57077	242 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ST3GAL2	Q16842	350 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ZACN	Q401N2	412 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	C1orf220	Q5T0J3	134 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	SNX30	Q5VWJ9	437 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	CEP135	Q66GS9	1140 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ATL3	Q6DD88	541 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	PSAPL1	Q6NUJ1	521 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	SV2A	Q7L0J3	742 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	GPRIN1	Q7Z2K8	1008 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	CYP2U1	Q7Z449	544 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	TMEM25	Q86YD3	366 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	SLC9A9	Q8IVB4	645 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ETFBKMT	Q8IXQ9	262 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	OLIG1	Q8TAK6	271 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	HMGB4	Q8WW32	186 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	JAKMIP2	Q96AA8	810 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	NACA2	Q9H009	215 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	TBC1D14	Q9P2M4	693 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	RCOR1	Q9UKL0	485 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ANGPTL2	Q9UKU9	493 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	CFAP45	Q9UL16	551 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	SH3BP1	Q9Y3L3	701 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	ABCA7	Q8IZY2	2146 aa		11.15	□□□□□ -0.62
LSM4-205	ENST00000597776	MYOF	Q9NZM1	2061 aa		11.15	□□□□□ -0.63
LSM4-205	ENST00000597776	TCRBV21S2A2	A0A5A6	115 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	FAM92A	A1XBS5	289 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	GIPC1	O14908	333 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	HOXC11	O43248	304 aa	Predicted RBP	11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TULP3	O75386	442 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	ALDH1A2	O94788	518 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	KCNK5	O95279	499 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TBX18	O95935	607 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	ASS1	P00966	412 aa	Known RBP	11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	HLA-DRA	P01903	254 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	P4HA1	P13674	534 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	ADORA2B	P29275	332 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	P2RY2	P41231	377 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TNFRSF4	P43489	277 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TUB	P50607	506 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	GAD2	Q05329	585 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	SGSM1	Q2NKQ1	1148 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	ANO4	Q32M45	955 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	EOGT	Q5NDL2	527 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	BTBD8	Q5XKL5	378 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	ARMCX6	Q7L4S7	300 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	C11orf74	Q86VG3	221 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TMC2	Q8TDI7	906 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	WHAMM	Q8TF30	809 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	PIGK	Q92643	395 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	TWNK	Q96RR1	684 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	SPHK2	Q9NRA0	654 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	OSER1	Q9NX31	292 aa		11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	MBD1	Q9UIS9	605 aa	Predicted RBP	11.14	□□□□□ -0.63
LSM4-205	ENST00000597776	USP24	Q9UPU5	2620 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	CFAP47	Q6ZTR5	3102 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776		A0A0A0MRY4	1105 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	TBC1D3B	A6NDS4	549 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	PDXK	O00764	312 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	KHNYN	O15037	678 aa	Known RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	CYP26A1	O43174	497 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	RPN1	P04843	607 aa	Known RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	PRR29	P0C7W0	189 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	FAM200B	P0CF97	657 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	TRIM49	P0CI25	452 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	TRIM49C	P0CI26	452 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	PDIA4	P13667	645 aa	Known RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	WAS	P42768	502 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	PTGER3	P43115	390 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	NOVA1	P51513	510 aa	Known RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	IRX4	P78413	519 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	MAP7D1	Q3KQU3	841 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	HSF5	Q4G112	596 aa	Predicted RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	C10orf76	Q5T2E6	689 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	MIB1	Q86YT6	1006 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	TMEFF1	Q8IYR6	380 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	CRYBG2	Q8N1P7	616 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	PGBD3	Q8N328	593 aa		11.13	□□□□□ -0.63

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