RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SLC38A8A6NNN8 435 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 FSCN2O14926 492 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 DAB1O75553 588 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 GRAP2O75791 330 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 GJB6O95452 261 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 F9P00740 461 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 ATP1A1P05023 1023 aaKnown RBP15.96■□□□□ 0.15
TRIM28-209ENST00000597423 PCK1P35558 622 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 CETN2P41208 172 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 PTPN9P43378 593 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 LRRC38Q5VT99 294 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 PLPP4Q5VZY2 271 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 BSPRYQ5W0U4 402 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 BTBD8Q5XKL5 378 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 EMC1Q8N766 993 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 SCAMP5Q8TAC9 235 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 CLEC4CQ8WTT0 213 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 KHSRPQ92945 711 aaKnown RBP eCLIP15.96■□□□□ 0.15
TRIM28-209ENST00000597423 HES6Q96HZ4 224 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 SLITRK1Q96PX8 696 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 NKX2-4Q9H2Z4 354 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 RNF14Q9UBS8 474 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 PCDHA3Q9Y5H8 950 aa15.96■□□□□ 0.15
TRIM28-209ENST00000597423 TSC2P49815 1807 aa15.96■□□□□ 0.14
TRIM28-209ENST00000597423 YJEFN3A6XGL0 299 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 E7ENQ6 273 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 CES2O00748 559 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 GRM6O15303 877 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TGM5O43548 720 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 PSTPIP1O43586 416 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 VNN2O95498 520 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 GLUD1P00367 558 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 KRT7P08729 469 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 RALAP11233 206 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 NCAM1P13591 858 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 CTNNA2P26232 953 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 GBP1P32455 592 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 PBX2P40425 430 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 PPP3CCP48454 512 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 YWHAGP61981 247 aaKnown RBP eCLIP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 SMAD3P84022 425 aaKnown RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 IFRD2Q12894 506 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TAF5Q15542 800 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 PTPROQ16827 1216 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 SLC25A52Q3SY17 297 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 CCDC14Q49A88 953 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 DCAF6Q58WW2 860 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 STRADAQ7RTN6 431 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 GPRIN1Q7Z2K8 1008 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TADA2BQ86TJ2 420 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 DEFB106AQ8N104 65 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 ELMOD1Q8N336 334 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 PDZD8Q8NEN9 1154 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 RNF139Q8WU17 664 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 OVCA2Q8WZ82 227 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 FBXO32Q969P5 355 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 SLC2A13Q96QE2 648 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 CDK5RAP1Q96SZ6 601 aaKnown RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TLR10Q9BXR5 811 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TRIM7Q9C029 511 aa15.95■□□□□ 0.14
TRIM28-209ENST00000597423 TLR8Q9NR97 1041 aaKnown RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 UXTQ9UBK9 157 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 MKI67P46013 3256 aaKnown RBP15.95■□□□□ 0.14
TRIM28-209ENST00000597423 FAM92AA1XBS5 289 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 KCNK3O14649 394 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 SEC24AO95486 1093 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 CTNNA1P35221 906 aaKnown RBP15.94■□□□□ 0.14
TRIM28-209ENST00000597423 FLT3P36888 993 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 PAFAH1B1P43034 410 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 GPR15P49685 360 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 RWDD2BP57060 319 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 BOLA3Q53S33 107 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 SDHAF4Q5VUM1 108 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 LILRA6Q6PI73 481 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 SND1Q7KZF4 910 aaKnown RBP eCLIP15.94■□□□□ 0.14
TRIM28-209ENST00000597423 TTC9BQ8N6N2 239 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 KREMEN2Q8NCW0 462 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 GIPC2Q8TF65 315 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 HDAC7Q8WUI4 952 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 ARNTL2Q8WYA1 636 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 NDRG1Q92597 394 aaKnown RBP15.94■□□□□ 0.14
TRIM28-209ENST00000597423 PPP2R3CQ969Q6 453 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 OSBPL9Q96SU4 736 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 CRISPLD1Q9H336 500 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 GOLPH3Q9H4A6 298 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 PLEKHA4Q9H4M7 779 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 DDX56Q9NY93 547 aaKnown RBP15.94■□□□□ 0.14
TRIM28-209ENST00000597423 CLIC5Q9NZA1 410 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 CDC23Q9UJX2 597 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 YIPF1Q9Y548 306 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 PTPRSQ13332 1948 aa15.94■□□□□ 0.14
TRIM28-209ENST00000597423 NCK2O43639 380 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 PRPSAP2O60256 369 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 SOAT2O75908 522 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 LRG1P02750 347 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 DNAJB1P25685 340 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 OGDHQ02218 1023 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 TWF1Q12792 350 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 WHAMMP3Q1A5X7 153 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 PABPC1LQ4VXU2 614 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms