RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 E2F8A0AVK6 867 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 XPO1O14980 1071 aaKnown RBP17.07■□□□□ 0.32
TRIM28-206ENST00000595974 SETSIPP0DME0 302 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 NBL1P41271 181 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 NR1H3Q13133 447 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 STILQ15468 1287 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 MAN2A1Q16706 1144 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 RAB41Q5JT25 222 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 KLHDC10Q6PID8 442 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 TRIM65Q6PJ69 517 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 MAMSTRQ6ZN01 415 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 GBP6Q6ZN66 633 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 RRAGAQ7L523 313 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 ENOSF1Q7L5Y1 443 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 RBBP8NLQ8NC74 664 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-206ENST00000595974 CHFRQ96EP1 664 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 TBC1D14Q9P2M4 693 aa17.07■□□□□ 0.32
TRIM28-206ENST00000595974 A0A1W2PQH9 124 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 PROB1E7EW31 1015 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 TRDMT1O14717 391 aaKnown RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 HOXD11P31277 338 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 GJA4P35212 333 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 ATP5C1P36542 298 aaKnown RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 PGFP49763 221 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 ZNF132P52740 706 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 PDE4CQ08493 712 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 MTAPQ13126 283 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 CCINQ13939 588 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 ZNF528Q3MIS6 628 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 TMEM196Q5HYL7 178 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 LCLAT1Q6UWP7 414 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 TADA2BQ86TJ2 420 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 MAML2Q8IZL2 1156 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 ARHGAP18Q8N392 663 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 SYNPOQ8N3V7 929 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 ZNF276Q8N554 614 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 OTUB2Q96DC9 234 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 KREMEN1Q96MU8 473 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 CDK5RAP1Q96SZ6 601 aaKnown RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 PHOX2BQ99453 314 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 NMUR1Q9HB89 426 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 PRMT8Q9NR22 394 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.06■□□□□ 0.32
TRIM28-206ENST00000595974 OSER1Q9NX31 292 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 CLIC5Q9NZA1 410 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 NAGPAQ9UK23 515 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 CNTN6Q9UQ52 1028 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 SH3BP1Q9Y3L3 701 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 MYO15AQ9UKN7 3530 aa17.06■□□□□ 0.32
TRIM28-206ENST00000595974 SP9P0CG40 484 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 RALAP11233 206 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 RARGP13631 454 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 PLA2G4AP47712 749 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 MFAP3P55082 362 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 GOLGA8FQ08AF8 430 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 GOLGA8DPQ0D2H9 430 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 GRSF1Q12849 480 aaKnown RBP eCLIP17.05■□□□□ 0.32
TRIM28-206ENST00000595974 EXOC3L4Q17RC7 722 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 PKDCCQ504Y2 493 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 SMYD5Q6GMV2 418 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 ZC3H14Q6PJT7 736 aaKnown RBP17.05■□□□□ 0.32
TRIM28-206ENST00000595974 TFAP2BQ92481 460 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 CRACR2AQ9BSW2 395 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 LINC00597Q9H2U6 94 aa17.05■□□□□ 0.32
TRIM28-206ENST00000595974 RBM12Q9NTZ6 932 aaKnown RBP17.05■□□□□ 0.32
TRIM28-206ENST00000595974 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.05■□□□□ 0.32
TRIM28-206ENST00000595974 FAM186AA6NE01 2351 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 RIF1Q5UIP0 2472 aaKnown RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 RNF225M0QZC1 329 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 TULP2O00295 520 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 CYP17A1P05093 508 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 PRKCSHP14314 528 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 DRD1P21728 446 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 BRD2P25440 801 aaKnown RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 MRE11P49959 708 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 CCR3P51677 355 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 TKTL1P51854 596 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 PPP2R5DQ14738 602 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 CNGA2Q16280 664 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 CCDC183Q5T5S1 534 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 SCD5Q86SK9 330 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 SPEM1Q8N4L4 309 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 KCTD13Q8WZ19 329 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 P2RY13Q9BPV8 354 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 TUBGCP2Q9BSJ2 902 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 KLF16Q9BXK1 252 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 LRRC4Q9HBW1 653 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 UBE2TQ9NPD8 197 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-206ENST00000595974 APEX2Q9UBZ4 518 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 DNMT3LQ9UJW3 386 aa17.04■□□□□ 0.32
TRIM28-206ENST00000595974 M0QYV0 167 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 TBX18O95935 607 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ZBED1O96006 694 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ADH1CP00326 375 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 KRT5P13647 590 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 SLC9A1P19634 815 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 EEF1GP26641 437 aaKnown RBP17.03■□□□□ 0.32
TRIM28-206ENST00000595974 ADIGQ0VDE8 80 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 GAS6Q14393 721 aa17.03■□□□□ 0.32
TRIM28-206ENST00000595974 DHCR24Q15392 516 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms