RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PRMT8Q9NR22 394 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 LMBRD1Q9NUN5 540 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 SMPD4Q9NXE4 827 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 FBXO4Q9UKT5 387 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 KIAA1549LQ6ZVL6 1849 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 CYP26A1O43174 497 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 AFPP02771 609 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 ACO1P21399 889 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 SDHBP21912 280 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 KCNH2Q12809 1159 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 CCINQ13939 588 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 DGKKQ5KSL6 1271 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 LMO3Q8TAP4 145 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 ZFRQ96KR1 1074 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 CNOT6LQ96LI5 555 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 GBP4Q96PP9 640 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 CCSER2Q9H7U1 834 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 ECT2Q9H8V3 914 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 TLR8Q9NR97 1041 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 RBM12Q9NTZ6 932 aaKnown RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 CHORDC1Q9UHD1 332 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-205ENST00000595028 SCML2Q9UQR0 700 aa15.94■□□□□ 0.14
TRIM28-205ENST00000595028 TLR5O60602 858 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 NFATC1O95644 943 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 GJA4P35212 333 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 PGFP49763 221 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 KIF11P52732 1056 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 AMPD2Q01433 879 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 ZNF528Q3MIS6 628 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 TMEM196Q5HYL7 178 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 TTC30AQ86WT1 665 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 PPM1KQ8N3J5 372 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 CFAP97Q9P2B7 532 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 NCDNQ9UBB6 729 aa15.93■□□□□ 0.14
TRIM28-205ENST00000595028 DCDC2BA2VCK2 349 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 TRDMT1O14717 391 aaKnown RBP15.92■□□□□ 0.14
TRIM28-205ENST00000595028 CD19P15391 556 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 BCAT1P54687 386 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 GCNT1Q02742 428 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 GAS6Q14393 721 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 GOLGA7BQ2TAP0 167 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 DPCR1Q3MIW9 517 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 SGO2Q562F6 1265 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 TMEM270Q6UE05 265 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 MAMSTRQ6ZN01 415 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 Q6ZS52 159 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 CCDC186Q7Z3E2 898 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 PIGZQ86VD9 579 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 ANKRD52Q8NB46 1076 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 KAT5Q92993 513 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 NACA2Q9H009 215 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 INTS2Q9H0H0 1204 aaKnown RBP15.92■□□□□ 0.14
TRIM28-205ENST00000595028 LINC00597Q9H2U6 94 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 NMUR1Q9HB89 426 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 CYLDQ9NQC7 956 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 RALYQ9UKM9 306 aaKnown RBP15.92■□□□□ 0.14
TRIM28-205ENST00000595028 TSPAN16Q9UKR8 245 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 USP3Q9Y6I4 520 aa15.92■□□□□ 0.14
TRIM28-205ENST00000595028 MYOFQ9NZM1 2061 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 A0A1W2PQH9 124 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 O00370 1275 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 SLC9A3R1O14745 358 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 SCAMP3O14828 347 aaKnown RBP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 CYP17A1P05093 508 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 ADRB1P08588 477 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 CCR3P51677 355 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 SLC8A3P57103 927 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 CSTF1Q05048 431 aaKnown RBP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 GRSF1Q12849 480 aaKnown RBP eCLIP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 NAIF1Q69YI7 327 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 FSTL4Q6MZW2 842 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 ARHGEF19Q8IW93 802 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 SYNPOQ8N3V7 929 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 SPEM1Q8N4L4 309 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 EHBP1Q8NDI1 1231 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 P2RY13Q9BPV8 354 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 UBXN6Q9BZV1 441 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 OSER1Q9NX31 292 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 CDV3Q9UKY7 258 aaKnown RBP15.91■□□□□ 0.14
TRIM28-205ENST00000595028 PCDHB4Q9Y5E5 795 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 FAM208BQ5VWN6 2430 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 ATG2BQ96BY7 2078 aa15.91■□□□□ 0.14
TRIM28-205ENST00000595028 E2F8A0AVK6 867 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 PAEPP09466 180 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 VDRP11473 427 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 TDGF1P13385 188 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 PSEN1P49768 467 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 ZNF132P52740 706 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 BST2Q10589 180 aaKnown RBP15.9■□□□□ 0.14
TRIM28-205ENST00000595028 NR1H3Q13133 447 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 RAB41Q5JT25 222 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 TSSK4Q6SA08 328 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 RRAGAQ7L523 313 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 IRF2BP1Q8IU81 584 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 GPR161Q8N6U8 529 aaKnown RBP15.9■□□□□ 0.14
TRIM28-205ENST00000595028 NELL1Q92832 810 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 CD101Q93033 1021 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 EXOC4Q96A65 974 aa15.9■□□□□ 0.14
TRIM28-205ENST00000595028 IPO9Q96P70 1041 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms