RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FHOD1Q9Y613 1164 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CPQQ9Y646 472 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 A0A1W2PQH9 124 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 LEFTY2O00292 366 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 ARNTLO00327 626 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 MAN2B1O00754 1011 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 TLR5O60602 858 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 PDGFBP01127 241 aaPredicted RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 RARGP13631 454 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 GPD2P43304 727 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 PDGFRLQ15198 375 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 SYCP1Q15431 976 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 ASTLQ6HA08 431 aaPredicted RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 PMF1Q6P1K2 205 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 KLHDC10Q6PID8 442 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 C1orf228Q6PIY5 440 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 ZNF852Q6ZMS4 543 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 APTXQ7Z2E3 356 aaKnown RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 FAM71AQ8IYT1 594 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 SIX6OS1Q8N1H7 587 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 SCML4Q8N228 414 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 TTC16Q8NEE8 873 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 NEK11Q8NG66 645 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 OSCP1Q8WVF1 389 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 MSANTD3Q96H12 275 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 ZFYVE19Q96K21 471 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 NELL2Q99435 816 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 FAM83CQ9BQN1 747 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 ULBP1Q9BZM6 244 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 C8orf33Q9H7E9 229 aaPredicted RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 CBX8Q9HC52 389 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 CNGB3Q9NQW8 809 aa15.8■□□□□ 0.12
UPF1-202ENST00000594243 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.8■□□□□ 0.12
UPF1-202ENST00000594243 AJAP1Q9UKB5 411 aaPredicted RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 MRPS17Q9Y2R5 130 aaKnown RBP15.8■□□□□ 0.12
UPF1-202ENST00000594243 KANSL1LA0AUZ9 987 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 GOLGA6L19H0YKK7 550 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 LCP1P13796 627 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 CLCN1P35523 988 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 KRT9P35527 623 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 ACADSBP45954 432 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 PGFP49763 221 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 KPNA1P52294 538 aaPredicted RBP15.79■□□□□ 0.12
UPF1-202ENST00000594243 YWHAGP61981 247 aaKnown RBP eCLIP15.79■□□□□ 0.12
UPF1-202ENST00000594243 ZXDBP98169 803 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 GOLGA8FQ08AF8 430 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 GOLGA8DPQ0D2H9 430 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 ADIGQ0VDE8 80 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 USP4Q13107 963 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 RUNX3Q13761 415 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 IER5LQ5T953 404 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 TPRG1Q6ZUI0 275 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 SCD5Q86SK9 330 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 STK32AQ8WU08 396 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 ERGIC2Q96RQ1 377 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 DDX23Q9BUQ8 820 aaKnown RBP15.79■□□□□ 0.12
UPF1-202ENST00000594243 TBC1D17Q9HA65 648 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 NMUR1Q9HB89 426 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 ACP6Q9NPH0 428 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 FAM207AQ9NSI2 230 aaPredicted RBP15.79■□□□□ 0.12
UPF1-202ENST00000594243 OSER1Q9NX31 292 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 DUS2Q9NX74 493 aaKnown RBP15.79■□□□□ 0.12
UPF1-202ENST00000594243 SMPD4Q9NXE4 827 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 PCDHGC3Q9UN70 934 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 SIK3Q9Y2K2 1263 aa15.79■□□□□ 0.12
UPF1-202ENST00000594243 PATJQ8NI35 1801 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SLC9A3R1O14745 358 aaPredicted RBP15.78■□□□□ 0.12
UPF1-202ENST00000594243 FBXO21O94952 628 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SERPINC1P01008 464 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 AOC1P19801 751 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 AVPR2P30518 371 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 IFNAR2P48551 515 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 RGS7P49802 495 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 KLK7P49862 253 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 POLR2FP61218 127 aaKnown RBP15.78■□□□□ 0.12
UPF1-202ENST00000594243 AMPD2Q01433 879 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 ITPRIPL2Q3MIP1 535 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 BTBD8Q5XKL5 378 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 DENND1BQ6P3S1 775 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SLC47A2Q86VL8 602 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 RIN3Q8TB24 985 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 IRGQQ8WZA9 623 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 ATP2A3Q93084 1043 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SPAG5Q96R06 1193 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 OSBPL6Q9BZF3 934 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 GANQ9H2C0 597 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 LHX5Q9H2C1 402 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 RTN4Q9NQC3 1192 aaKnown RBP15.78■□□□□ 0.12
UPF1-202ENST00000594243 ST7Q9NRC1 585 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 ABCC13Q9NSE7 274 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 GTSE1Q9NYZ3 720 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 TBC1D14Q9P2M4 693 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 DNMT3LQ9UJW3 386 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SH3BP1Q9Y3L3 701 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 SIT1Q9Y3P8 196 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 PIAS3Q9Y6X2 628 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 MYH10P35580 1976 aa15.78■□□□□ 0.12
UPF1-202ENST00000594243 ZNF638Q14966 1978 aaKnown RBP15.78■□□□□ 0.12
UPF1-202ENST00000594243 ANAPC1Q9H1A4 1944 aa15.77■□□□□ 0.12
UPF1-202ENST00000594243 E2F8A0AVK6 867 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms