RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NOX5Q96PH1 765 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 PANX2Q96RD6 677 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 MYADMQ96S97 322 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 C11orf70Q9BRQ4 267 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 NHEJ1Q9H9Q4 299 aaPredicted RBP11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 CNGB3Q9NQW8 809 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 TRPM5Q9NZQ8 1165 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 THEGQ9P2T0 379 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 NENFQ9UMX5 172 aa11.25□□□□□ -0.61
SMARCA4-213ENST00000587988 DOCK8Q8NF50 2099 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SSU72P8A0A1W2PR75 194 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 FBXO21O94952 628 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 FGF19O95750 216 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 FTLP02792 175 aaPredicted RBP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 GZMAP12544 262 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 FECHP22830 423 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MMP8P22894 467 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 NSFP46459 744 aaKnown RBP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 YWHAGP61981 247 aaKnown RBP eCLIP11.24□□□□□ -0.617e-6■■■□□ 18.1
SMARCA4-213ENST00000587988 TAF5Q15542 800 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 GPR158Q5T848 1215 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SNX30Q5VWJ9 437 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 OLFML1Q6UWY5 402 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MON1BQ7L1V2 547 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MON1AQ86VX9 555 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 TMEM139Q8IV31 216 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 NPAS3Q8IXF0 933 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MCOLN2Q8IZK6 566 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MAB21L3Q8N8X9 362 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 ST13P5Q8NFI4 369 aaPredicted RBP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 IPO4Q8TEX9 1081 aaKnown RBP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 FGF13Q92913 245 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 KHSRPQ92945 711 aaKnown RBP eCLIP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 MCRS1Q96EZ8 462 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SLC22A12Q96S37 553 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 CYP2S1Q96SQ9 504 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SLC46A2Q9BY10 475 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SYNCQ9H7C4 482 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 CCSER2Q9H7U1 834 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 TLR8Q9NR97 1041 aaKnown RBP11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 ADAM22Q9P0K1 906 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 NAGPAQ9UK23 515 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 NUDT5Q9UKK9 219 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 NCANO14594 1321 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 PRUNE2Q8WUY3 3088 aa11.24□□□□□ -0.61
SMARCA4-213ENST00000587988 SOWAHDA6NJG2 315 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 ZNF263O14978 683 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 RTN2O75298 545 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 GRAP2O75791 330 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 GJB6O95452 261 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 TBX18O95935 607 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 OAS1P00973 400 aaKnown RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 FYNP06241 537 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 GBP2P32456 591 aaPredicted RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 PPP3CCP48454 512 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 SLC6A3Q01959 620 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 SLC18A3Q16572 532 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 PUS10Q3MIT2 529 aaKnown RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 BSPRYQ5W0U4 402 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 ALKBH5Q6P6C2 394 aaKnown RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 VPS36Q86VN1 386 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 ARL14EPQ8N8R7 260 aaPredicted RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 PDZD8Q8NEN9 1154 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 IRGQQ8WZA9 623 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 EDEM1Q92611 657 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 MRPS31Q92665 395 aaKnown RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 GCNAQ96QF7 691 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 PHF7Q9BWX1 381 aaPredicted RBP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 RNF38Q9H0F5 515 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 ISCUQ9H1K1 167 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 DEF6Q9H4E7 631 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 TASP1Q9H6P5 420 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 TRPC7Q9HCX4 862 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 SPTLC3Q9NUV7 552 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 CDH7Q9ULB5 785 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 COL6A3P12111 3177 aa11.23□□□□□ -0.61
SMARCA4-213ENST00000587988 TCRBV5S1A1TA0A578 114 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 GOLGA6L6A8MZA4 724 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 C2CD4DB7Z1M9 353 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 GOLGA8SH3BPF8 625 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 MDM4O15151 490 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 COCHO43405 550 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 AKR1B10O60218 316 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 TLR5O60602 858 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 LTFP02788 710 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 RARGP13631 454 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 DDX6P26196 483 aaKnown RBP eCLIP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 GSDMDP57764 484 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 SNX16P57768 344 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 C1QBPQ07021 282 aaKnown RBP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 ZNF268Q14587 947 aaPredicted RBP11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 MTF1Q14872 753 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 ARHGAP15Q53QZ3 475 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 CCDC122Q5T0U0 273 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 HECTD3Q5T447 861 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 BTBD8Q5XKL5 378 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 RAD9BQ6WBX8 426 aa11.22□□□□□ -0.61
SMARCA4-213ENST00000587988 ARHGAP18Q8N392 663 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms