RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 E2F8A0AVK6 867 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 TBC1D3BA6NDS4 549 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 SLC9A3R1O14745 358 aaPredicted RBP12.33□□□□□ -0.44
LIG3-207ENST00000586119 POLR2DO15514 142 aaKnown RBP12.33□□□□□ -0.44
LIG3-207ENST00000586119 PHACTR2O75167 634 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 TULP3O75386 442 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 C4BPAP04003 597 aaKnown RBP12.33□□□□□ -0.44
LIG3-207ENST00000586119 FAM163BP0C2L3 166 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 CCDC130P13994 396 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 ITPKAP23677 461 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 GRIA2P42262 883 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 TNFRSF4P43489 277 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 SLC5A3P53794 718 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 DLG4P78352 724 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 GAD2Q05329 585 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 HECTD3Q5T447 861 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 CNNM4Q6P4Q7 775 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 UNC13DQ70J99 1090 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 LPCAT2Q7L5N7 544 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 ACOT1Q86TX2 421 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 FUKQ8N0W3 1084 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 OR2I1PQ8NGU4 316 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 P2RY11Q96G91 374 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 SLC6A17Q9H1V8 727 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 ZSCAN16Q9H4T2 348 aaPredicted RBP12.33□□□□□ -0.44
LIG3-207ENST00000586119 CD93Q9NPY3 652 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 IL37Q9NZH6 218 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 BCCIPQ9P287 314 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG3-207ENST00000586119 HMGXB4Q9UGU5 601 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 NUDT5Q9UKK9 219 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 SH3BP1Q9Y3L3 701 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 CHD6Q8TD26 2715 aa12.33□□□□□ -0.44
LIG3-207ENST00000586119 SPAARA0A1B0GVQ0 90 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 LRRIQ3A6PVS8 624 aaPredicted RBP12.32□□□□□ -0.44
LIG3-207ENST00000586119 GREM1O60565 184 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 EXOC3O60645 756 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 CUTAO60888 179 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 PPP6R2O75170 966 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 ALDH1A2O94788 518 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 STAU1O95793 577 aaKnown RBP12.32□□□□□ -0.44
LIG3-207ENST00000586119 ADH1CP00326 375 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 ZDHHC11BP0C7U3 371 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 ENGP17813 658 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 GABRG2P18507 467 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 EIF2DP41214 584 aaKnown RBP12.32□□□□□ -0.44
LIG3-207ENST00000586119 ANO4Q32M45 955 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 EOGTQ5NDL2 527 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 SPOPLQ6IQ16 392 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 UNQ6494/PRO21346Q6UXR6 183 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 TOGARAM2Q6ZUX3 1019 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 C12orf29Q8N999 325 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 IQUBQ8NA54 791 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 CCDC26Q8TAB7 109 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 PARD3BQ8TEW8 1205 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 WHAMMQ8TF30 809 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 SCNM1Q9BWG6 230 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 LRRC27Q9C0I9 530 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 POLMQ9NP87 494 aaPredicted RBP12.32□□□□□ -0.44
LIG3-207ENST00000586119 OSER1Q9NX31 292 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 EHD2Q9NZN4 543 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 TBC1D14Q9P2M4 693 aa12.32□□□□□ -0.44
LIG3-207ENST00000586119 CEP295Q9C0D2 2601 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 AKAP13Q12802 2813 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 A0A1W2PQF6 199 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 WASH3PC4AMC7 463 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 MDM4O15151 490 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 KLRC4O43908 158 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 AP1G2O75843 785 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 RTN3O95197 1032 aaPredicted RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 CEACAM1P13688 526 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 CSRP1P21291 193 aaKnown RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 ATICP31939 592 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 MAP3K7CLP57077 242 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 FAM193AP78312 1265 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 AMPD3Q01432 767 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 STK4Q13043 487 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 BIRC3Q13489 604 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 NCOA4Q13772 614 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 KNOP1Q1ED39 458 aaKnown RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 ZNF699Q32M78 642 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 ZNF667Q5HYK9 610 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 C10orf76Q5T2E6 689 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 SNX30Q5VWJ9 437 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 GPRIN1Q7Z2K8 1008 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 C11orf74Q86VG3 221 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 SYT12Q8IV01 421 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 ZNF513Q8N8E2 541 aaPredicted RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 KIAA1958Q8N8K9 716 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 SYAP1Q96A49 352 aaPredicted RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 JAKMIP2Q96AA8 810 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 TWNKQ96RR1 684 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 KLF16Q9BXK1 252 aaPredicted RBP12.31□□□□□ -0.44
LIG3-207ENST00000586119 CUEDC2Q9H467 287 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 SPHK2Q9NRA0 654 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 FAM49BQ9NUQ9 324 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 SERTAD1Q9UHV2 236 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 PILRBQ9UKJ0 227 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 PCDHA7Q9UN72 937 aa12.31□□□□□ -0.44
LIG3-207ENST00000586119 RAD54BQ9Y620 910 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms