RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SOD2P04179 222 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ITGB1P05556 798 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RHOXF2BP0C7M4 288 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ACRP10323 421 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RALAP11233 206 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 NCAM1P13591 858 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 EN2P19622 333 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 FGFR3P22607 806 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CHRNA3P32297 505 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 NOS2P35228 1153 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RFC1P35251 1148 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 PCK1P35558 622 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ARL4AP40617 200 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 MATKP42679 507 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 MAGEA11P43364 429 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 DAOAP59103 153 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 DEFB103AP81534 67 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ATP11AP98196 1134 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 DEUP1Q05D60 604 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 PLD1Q13393 1074 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ZNF211Q13398 564 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 DHX34Q14147 1143 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 TFDP2Q14188 446 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 PDK2Q15119 407 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 DCAF6Q58WW2 860 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 EFHC2Q5JST6 749 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 BTBD8Q5XKL5 378 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 LLGL2Q6P1M3 1020 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 FAM171BQ6P995 826 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RSRC2Q7L4I2 434 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 STRADAQ7RTN6 431 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 MTERF4Q7Z6M4 381 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 CREG2Q8IUH2 290 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 SCUBE3Q8IX30 993 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 KLHL7Q8IXQ5 586 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 SCML4Q8N228 414 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RASGEF1CQ8N431 466 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 MMGT1Q8N4V1 131 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 WDTC1Q8N5D0 677 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 EMC1Q8N766 993 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 COLGALT1Q8NBJ5 622 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 KCTD6Q8NC69 237 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 PDZD8Q8NEN9 1154 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 OR10T2Q8NGX3 314 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 JOSD2Q8TAC2 188 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 FAM172AQ8WUF8 416 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 TEKT4Q8WW24 435 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RXFP2Q8WXD0 754 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RIN2Q8WYP3 895 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 HSPH1Q92598 858 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 DPF3Q92784 378 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 BADQ92934 168 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 WNT2BQ93097 391 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 RNF34Q969K3 372 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 TRIM43Q96BQ3 446 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 IGSF21Q96ID5 467 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CCDC114Q96M63 670 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CFAP57Q96MR6 1250 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 SLITRK1Q96PX8 696 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CDK5RAP1Q96SZ6 601 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 RHOXF2Q9BQY4 288 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CALN1Q9BXU9 219 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 ULBP1Q9BZM6 244 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 CSNK1G1Q9HCP0 422 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 MRPL17Q9NRX2 175 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 ABCC13Q9NSE7 274 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 OLA1Q9NTK5 396 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIG3-206ENST00000586058 COMMD8Q9NX08 183 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIG3-206ENST00000586058 CYTH4Q9UIA0 394 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 TTC7AQ9ULT0 858 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 USP18Q9UMW8 372 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 UTP11Q9Y3A2 253 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 PCDHGA10Q9Y5H3 936 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 NR2E3Q9Y5X4 410 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 V9GYY5 206 aaPredicted RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 KIAA0100Q14667 2235 aaKnown RBP6.47□□□□□ -1.37
LIG3-206ENST00000586058 DOCK4Q8N1I0 1966 aa6.47□□□□□ -1.37
LIG3-206ENST00000586058 SYNJ2BP-COX16A0A087WUM0 186 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TCRBV5S1A1TA0A578 114 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 C2CD4BA6NLJ0 364 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 F8VP50 259 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 C2CD2LO14523 706 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PRRG1O14668 218 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 MDM4O15151 490 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 FANCGO15287 622 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PAPSS1O43252 624 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 LRCH4O75427 683 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GJB5O95377 273 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 GJB6O95452 261 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ATP2A2P16615 1042 aaKnown RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 ZFXP17010 805 aaPredicted RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 CTNNB1P35222 781 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ACTN2P35609 894 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 FLT3P36888 993 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 PBX3P40426 434 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 ALDH1A3P47895 512 aa6.46□□□□□ -1.38
LIG3-206ENST00000586058 TUFMP49411 452 aaKnown RBP6.46□□□□□ -1.38
LIG3-206ENST00000586058 NDUFV1P49821 464 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms