RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 EGFLAMQ63HQ2 1017 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 HS2ST1Q7LGA3 356 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 TMPRSS7Q7RTY8 843 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 CHPFQ8IZ52 775 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 SETD7Q8WTS6 366 aaKnown RBP13.56□□□□□ -0.24
SS18-219ENST00000581570 NOC3LQ8WTT2 800 aaKnown RBP13.56□□□□□ -0.24
SS18-219ENST00000581570 HPDLQ96IR7 371 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 ANKRD36BP1Q96IX9 119 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 ACOX2Q99424 681 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 STRA6Q9BX79 667 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 MRPL44Q9H9J2 332 aaKnown RBP13.56□□□□□ -0.24
SS18-219ENST00000581570 SPHK2Q9NRA0 654 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 DKK4Q9UBT3 224 aa13.56□□□□□ -0.24
SS18-219ENST00000581570 PLXND1Q9Y4D7 1925 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 COCHO43405 550 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 GARTP22102 1010 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 YWHAQP27348 245 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 L1TD1Q5T7N2 865 aaKnown RBP13.55□□□□□ -0.24
SS18-219ENST00000581570 GRAMD4Q6IC98 578 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 DYMQ7RTS9 669 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 TMEM25Q86YD3 366 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 BBS7Q8IWZ6 715 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 ADAM32Q8TC27 787 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 MMS19Q96T76 1030 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 SLC6A17Q9H1V8 727 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 CD248Q9HCU0 757 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 CD93Q9NPY3 652 aa13.55□□□□□ -0.24
SS18-219ENST00000581570 ITPR1Q14643 2758 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 A0A1B0GTW7 788 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 GNL1P36915 607 aaPredicted RBP13.54□□□□□ -0.24
SS18-219ENST00000581570 CACNA2D1P54289 1103 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 CYP4F3Q08477 520 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 C19orf57Q0VDD7 668 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 HECTD3Q5T447 861 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 KIAA1324Q6UXG2 1013 aaKnown RBP13.54□□□□□ -0.24
SS18-219ENST00000581570 SYCP3Q8IZU3 236 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 NUP93Q8N1F7 819 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 PDZD8Q8NEN9 1154 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 FBXO32Q969P5 355 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 ZFRQ96KR1 1074 aaKnown RBP13.54□□□□□ -0.24
SS18-219ENST00000581570 MRGPRX1Q96LB2 322 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 CBWD1Q9BRT8 395 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 SNX25Q9H3E2 840 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 PCIF1Q9H4Z3 704 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 IL21RQ9HBE5 538 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 DNAJC17Q9NVM6 304 aaKnown RBP13.54□□□□□ -0.24
SS18-219ENST00000581570 INTS13Q9NVM9 706 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 TBC1D7Q9P0N9 293 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 SEL1LQ9UBV2 794 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 CHORDC1Q9UHD1 332 aaPredicted RBP13.54□□□□□ -0.24
SS18-219ENST00000581570 KIF3AQ9Y496 699 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 RAD54BQ9Y620 910 aa13.54□□□□□ -0.24
SS18-219ENST00000581570 HELZP42694 1942 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 TRABD2BA6NFA1 517 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 MEI4A8MW99 385 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 EIF5BO60841 1220 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 RTN3O95197 1032 aaPredicted RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 GCNT3O95395 438 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 TNNC2P02585 160 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 PTPN1P18031 435 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 CD6P30203 668 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 LONP1P36776 959 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 OR5B17Q8NGF7 314 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 OR6B3Q8NGW1 331 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 SCFD1Q8WVM8 642 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 DNASE2BQ8WZ79 361 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 OVCA2Q8WZ82 227 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 XPO6Q96QU8 1125 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 CDC6Q99741 560 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 GABRG3Q99928 467 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 DUSP9Q99956 384 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 MRPL45Q9BRJ2 306 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 ELOVL4Q9GZR5 314 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 MIR1-1HGQ9H1L0 117 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 GAREM1Q9H706 876 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 PRDM16Q9HAZ2 1276 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 TM7SF3Q9NS93 570 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 TMEM30AQ9NV96 361 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 CACNA2D2Q9NY47 1150 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 PCDHB13Q9Y5F0 798 aa13.53□□□□□ -0.24
SS18-219ENST00000581570 SMG1Q96Q15 3661 aaKnown RBP13.53□□□□□ -0.24
SS18-219ENST00000581570 A0A087WV48 116 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 PRRT4C9JH25 899 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 CLDN5O00501 218 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 CILPO75339 1184 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 CER1O95813 267 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 ATXN1LP0C7T5 689 aaKnown RBP13.52□□□□□ -0.25
SS18-219ENST00000581570 ZNF883P0CG24 379 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 IRF1P10914 325 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 GAP43P17677 238 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 MATKP42679 507 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 GRIN1Q05586 938 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 DUOXA2Q1HG44 320 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 IL27RAQ6UWB1 636 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 MARCH9Q86YJ5 346 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 SCUBE3Q8IX30 993 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 GPD1LQ8N335 351 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 GALNT15Q8N3T1 639 aa13.52□□□□□ -0.25
SS18-219ENST00000581570 ZCCHC9Q8N567 271 aaKnown RBP13.52□□□□□ -0.25
SS18-219ENST00000581570 RHBDD1Q8TEB9 315 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms