RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 PPP1R36Q96LQ0 422 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 THUMPD3Q9BV44 507 aaKnown RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 OSGEPQ9NPF4 335 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 CORO1CQ9ULV4 474 aaPredicted RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 KRT87PA6NCN2 255 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 RRN3P2A6NIE6 340 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 MED26O95402 600 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 NTSR2O95665 410 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 CYBBP04839 570 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 ZDHHC17Q8IUH5 632 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 C4orf19Q8IY42 314 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 ZCCHC7Q8N3Z6 543 aaKnown RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 SLC25A23Q9BV35 468 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 TARS2Q9BW92 718 aaKnown RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 EHD4Q9H223 541 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 ZNF446Q9NWS9 450 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 NINJ2Q9NZG7 142 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 PIM2Q9P1W9 311 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 PCYOX1Q9UHG3 505 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 LSM7Q9UK45 103 aaKnown RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 TAF6P49848 677 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 MTA1Q13330 715 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 LRRC38Q5VT99 294 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 PLEKHA7Q6IQ23 1121 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 SLC35C1Q96A29 364 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 AGBL1Q96MI9 1066 aa11.08□□□□□ -0.64
SEC22B-201ENST00000578049 TRMT6Q9UJA5 497 aaKnown RBP11.08□□□□□ -0.64
SEC22B-201ENST00000578049 MED24O75448 989 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 KATNA1O75449 491 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 DDHD2O94830 711 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 PSMG1O95456 288 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 HOXB6P17509 224 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 BGNP21810 368 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 PTPN7P35236 360 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 SMTNL2Q2TAL5 461 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GOLGA7BQ2TAP0 167 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 WDR49Q8IV35 697 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 MCOLN2Q8IZK6 566 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NMD3Q96D46 503 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 ERAP1Q9NZ08 941 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 RPL21P46778 160 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 ITGB3BPQ13352 177 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 ZNF268Q14587 947 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 PARP6Q2NL67 630 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 DCAF6Q58WW2 860 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GRTP1Q5TC63 336 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GDPD5Q8WTR4 605 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 ZNF75CPQ92670 426 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NDEL1Q9GZM8 345 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 POLRMTO00411 1230 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GH1P01241 217 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 HK2P52789 917 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 LAYNQ6UX15 382 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 B3GNT6Q6ZMB0 384 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NET1Q7Z628 596 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 SLC7A14Q8TBB6 771 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 DIS3LQ8TF46 1054 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 SPIRE2Q8WWL2 714 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GMCL1Q96IK5 515 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 DUSP9Q99956 384 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 HMG20AQ9NP66 347 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 A1CFQ9NQ94 594 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 EIF2S1P05198 315 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 MMP14P50281 582 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 WASHC5Q12768 1159 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 MAD2L1Q13257 205 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NFYCQ13952 458 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 FAM118BQ9BPY3 351 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 LBHD1Q9BQE6 289 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TMEM79Q9BSE2 394 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 COMMD8Q9NX08 183 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 CROTQ9UKG9 612 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 RNF103O00237 685 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TPBGLP0DKB5 382 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TFE3P19532 575 aaPredicted RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 EPHB2P29323 1055 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 SERPINB5P36952 375 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NR2C2P49116 596 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 GTF2H3Q13889 308 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 NFIXQ14938 502 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TMEM119Q4V9L6 283 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 CDC42EP5Q6NZY7 148 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TCP10LQ8TDR4 215 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 PIN4Q9Y237 131 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 RGL2O15211 777 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 PGK2P07205 417 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 SYTL3Q4VX76 610 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 FAM98BQ52LJ0 330 aaKnown RBP11.07□□□□□ -0.64
SEC22B-201ENST00000578049 IYDQ6PHW0 289 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 TPRKBQ9Y3C4 175 aa11.07□□□□□ -0.64
SEC22B-201ENST00000578049 LDLRP01130 860 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ITGA4P13612 1032 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CPB1P15086 417 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 SLC26A2P50443 739 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 BCAT1P54687 386 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CYP24A1Q07973 514 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NCF4Q15080 339 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 PKN1Q16512 942 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms