RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PIK3CGP48736 1102 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 AARSP49588 968 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS53-219ENST00000576019 ACTR2P61160 394 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 CD69Q07108 199 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 KIAA2012Q0VF49 1180 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 NFATC3Q12968 1075 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 RAB32Q13637 225 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 PSMD6Q15008 389 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 LRRC26Q2I0M4 334 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 LMBRD2Q68DH5 695 aaPredicted RBP6.39□□□□□ -1.39
VPS53-219ENST00000576019 BMP8AQ7Z5Y6 402 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 LINC01599Q8WXQ3 324 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 TWNKQ96RR1 684 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 HNRNPABQ99729 332 aaKnown RBP6.39□□□□□ -1.39
VPS53-219ENST00000576019 SLF1Q9BQI6 1058 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 ADD3Q9UEY8 706 aaKnown RBP6.39□□□□□ -1.39
VPS53-219ENST00000576019 DNAI1Q9UI46 699 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 MID2Q9UJV3 735 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 ISY1Q9ULR0 285 aaKnown RBP6.39□□□□□ -1.39
VPS53-219ENST00000576019 COG5Q9UP83 839 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 SPTBN2O15020 2390 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 COL4A3Q01955 1670 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 ZZEF1O43149 2961 aa6.39□□□□□ -1.39
VPS53-219ENST00000576019 A0A1W2PR48 441 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 HMX2A2RU54 273 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 SPTLC2O15270 562 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 DHX15O43143 795 aaKnown RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 DKC1O60832 514 aaKnown RBP eCLIP6.38□□□□□ -1.393e-11■■■□□ 15.6
VPS53-219ENST00000576019 GPR32O75388 356 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 RASSF9O75901 435 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 LY86O95711 162 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 TK1P04183 234 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 NPPBP16860 134 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 DDCP20711 480 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CTNNA1P35221 906 aaKnown RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 SREBF1P36956 1147 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 KIR2DL1P43626 348 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 KIR2DL2P43627 348 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 CCR9P51686 369 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 ARF3P61204 181 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 AP2B1P63010 937 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 ARF1P84077 181 aaKnown RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 CUL4AQ13619 759 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 UBE3CQ15386 1083 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CRY2Q49AN0 593 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 VWA3BQ502W6 1294 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 ZMYM1Q5SVZ6 1142 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 GJC2Q5T442 439 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 MAP3K21Q5TCX8 1036 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 EMC10Q5UCC4 262 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 DCAF12L1Q5VU92 463 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 ARL6IP4Q66PJ3 421 aaKnown RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 SLC30A6Q6NXT4 461 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CRTC1Q6UUV9 634 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CLEC10AQ8IUN9 316 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 TEX11Q8IYF3 940 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 NETO2Q8NC67 525 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CCDC191Q8NCU4 936 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CFHR4Q92496 578 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 ATOH1Q92858 354 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 NEIL1Q96FI4 390 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 DYDC2Q96IM9 177 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 MPHOSPH8Q99549 860 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 FAM83CQ9BQN1 747 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 RTKNQ9BST9 563 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 PCDHAC1Q9H158 963 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 OR10A5Q9H207 317 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 LRRC4CQ9HCJ2 640 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 PRDM8Q9NQV8 689 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CWC25Q9NXE8 425 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 GALNT8Q9NY28 637 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 AJAP1Q9UKB5 411 aaPredicted RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 ACSL6Q9UKU0 697 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 RUVBL1Q9Y265 456 aaKnown RBP6.38□□□□□ -1.39
VPS53-219ENST00000576019 KMT2EQ8IZD2 1858 aa6.38□□□□□ -1.39
VPS53-219ENST00000576019 CEP250Q9BV73 2442 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 MBD3L4A6NDZ8 208 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 MBD3L3A6NE82 208 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 ZNF839A8K0R7 811 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 H0Y3Z8 333 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 ADCY6O43306 1168 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 PHF2O75151 1096 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 LTA4HP09960 611 aaKnown RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 TXNP10599 105 aaKnown RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 IDEP14735 1019 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 CHMP24386 653 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 IL1R2P27930 398 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 PCSK1P29120 753 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 HOXD13P35453 343 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 PSMC4P43686 418 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 GALK1P51570 392 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 COPAP53621 1224 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 ANTXR2P58335 489 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 RNASE9P60153 205 aaKnown RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 NOMO3P69849 1222 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 ZNF200P98182 395 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 ATP8B2P98198 1209 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 MEF2AQ02078 507 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 CYP27A1Q02318 531 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 PRKCZQ05513 592 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms