RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 E2F8A0AVK6 867 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 HHLA1C9JL84 531 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 GIPC1O14908 333 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 EXOC3O60645 756 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 KCNK5O95279 499 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 CAVIN2O95810 425 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ABL1P00519 1130 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 MBL2P11226 248 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 CCDC130P13994 396 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 YWHAQP27348 245 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 TIE1P35590 1138 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 EIF2DP41214 584 aaKnown RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 ASPAP45381 313 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 PDE6CP51160 858 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 DGKEP52429 567 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 SLC5A3P53794 718 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 MCCD1P59942 119 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 TNNC1P63316 161 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 MRPS21P82921 87 aaKnown RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 SHC2P98077 582 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 CREB5Q02930 508 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 DNM1Q05193 864 aaKnown RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 IFRD2Q12894 506 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 ORC1Q13415 861 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 NCOA4Q13772 614 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ZNF699Q32M78 642 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 MAP7D1Q3KQU3 841 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ZACNQ401N2 412 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 KMT5BQ4FZB7 885 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 LY6G5CQ5SRR4 150 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 TAF3Q5VWG9 929 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 SPOPLQ6IQ16 392 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ANO7Q6IWH7 933 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 SCARA5Q6ZMJ2 495 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 GPRIN1Q7Z2K8 1008 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ACOT1Q86TX2 421 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 MIB1Q86YT6 1006 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 BBS7Q8IWZ6 715 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ALLCQ8N6M5 410 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 C12orf29Q8N999 325 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 C12orf50Q8NA57 414 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 TSTD1Q8NFU3 115 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 OVCA2Q8WZ82 227 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 SYAP1Q96A49 352 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 PAGE5Q96GU1 130 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 TWNKQ96RR1 684 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 CSNK1G1Q9HCP0 422 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 OSER1Q9NX31 292 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 GMIPQ9P107 970 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 CGNQ9P2M7 1197 aaKnown RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 RCOR1Q9UKL0 485 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 ZDHHC9Q9Y397 364 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 TP53BP1Q12888 1972 aaPredicted RBP7.13□□□□□ -1.27
VPS53-213ENST00000572334 PTPRBP23467 1997 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 C4orf47A7E2U8 309 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 HOXC11O43248 304 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 RHOBTB1O94844 696 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 RTN3O95197 1032 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 KAT7O95251 611 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 KLF8O95600 359 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 TBX18O95935 607 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 ASS1P00966 412 aaKnown RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 SLFN14P0C7P3 912 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 PRR29P0C7W0 189 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 ADH5P11766 374 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 P2RY2P41231 377 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 TUBP50607 506 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 IRX4P78413 519 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 KDSRQ06136 332 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 TRPC3Q13507 836 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 ELF2Q15723 593 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 ZNF667Q5HYK9 610 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 HECTD3Q5T447 861 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 PEAR1Q5VY43 1037 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 RNF43Q68DV7 783 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 IL31Q6EBC2 164 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 SV2AQ7L0J3 742 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 TMEM25Q86YD3 366 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 CRYBG2Q8N1P7 616 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 NAT16Q8N8M0 369 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 TXNDC5Q8NBS9 432 aaKnown RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 SLC2A14Q8TDB8 520 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 WHAMMQ8TF30 809 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 RLN3Q8WXF3 142 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 DDX1Q92499 740 aaKnown RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 FBXO32Q969P5 355 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 EXOC4Q96A65 974 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 SMARCD1Q96GM5 515 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 SLITRK1Q96PX8 696 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 PNKPQ96T60 521 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 EDEM2Q9BV94 578 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 KLF16Q9BXK1 252 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 TMEM121BQ9BXQ6 578 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 NMUR1Q9HB89 426 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 APOBEC3GQ9HC16 384 aaKnown RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 DMAP1Q9NPF5 467 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 KRT82Q9NSB4 513 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 TMEM74BQ9NUR3 256 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 EHD2Q9NZN4 543 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms