RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 STRNO43815 780 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 C8BP07358 591 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 ATF2P15336 505 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 GPR3P46089 330 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 EPHB3P54753 998 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 DCAF7P61962 342 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 DLG4P78352 724 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 SMAD3P84022 425 aaKnown RBP6.69□□□□□ -1.34
VPS53-212ENST00000572259 KLRC3Q07444 240 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 POLD3Q15054 466 aaPredicted RBP6.69□□□□□ -1.34
VPS53-212ENST00000572259 SMAD2Q15796 467 aaKnown RBP6.69□□□□□ -1.34
VPS53-212ENST00000572259 MEA1Q16626 185 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 FAM47AQ5JRC9 791 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 CATSPEREQ5SY80 951 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 HECTD3Q5T447 861 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 MFSD4BQ5TF39 518 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 TMC5Q6UXY8 1006 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 B3GNT8Q7Z7M8 397 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 ZNF589Q86UQ0 364 aaPredicted RBP6.69□□□□□ -1.34
VPS53-212ENST00000572259 CACNA2D3Q8IZS8 1091 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 TEX9Q8N6V9 391 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 WDR48Q8TAF3 677 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 CHURC1Q8WUH1 139 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 SOCS4Q8WXH5 440 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 ASB15Q8WXK1 588 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 JADE3Q92613 823 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 MVB12AQ96EY5 273 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 CEP95Q96GE4 821 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 KRT23Q9C075 422 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 SLC39A2Q9NP94 309 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 CCM2LQ9NUG4 571 aaPredicted RBP6.69□□□□□ -1.34
VPS53-212ENST00000572259 GIMAP2Q9UG22 337 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 FEM1BQ9UK73 627 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 ASB1Q9Y576 335 aa6.69□□□□□ -1.34
VPS53-212ENST00000572259 TRIM64A6NGJ6 449 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 CAPN8A6NHC0 703 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 TRIM64BA6NI03 449 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 FOXN3O00409 490 aaPredicted RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 DTNBO60941 627 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 ZBED4O75132 1171 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SKAP2O75563 359 aaPredicted RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 FARP2O94887 1054 aaPredicted RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 UBXN7O94888 489 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SLC25A27O95847 323 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 GSPT1P15170 499 aaKnown RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 XBP1P17861 261 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 CHMLP26374 656 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 AOAHP28039 575 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SLC1A4P43007 532 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 FLT3LGP49771 235 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 MAPK10P53779 464 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 HAND2P61296 217 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 PHC1P78364 1004 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 TSPY1Q01534 308 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 IKQ13123 557 aaPredicted RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 SPARCL1Q14515 664 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 PLS1Q14651 629 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 STARD3Q14849 445 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 BMP2KLQ5H9B9 411 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 FAM209BQ5JX69 171 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SLFN13Q68D06 897 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 ENOSF1Q7L5Y1 443 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 PLEKHH3Q7Z736 793 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 FAM160B2Q86V87 743 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SIAH1Q8IUQ4 282 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 IGDCC3Q8IVU1 814 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 OTUD6BQ8N6M0 293 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 ZNF610Q8N9Z0 462 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 ZNF527Q8NB42 609 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 GMCL1P1Q8NEA9 526 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 LMBR1Q8WVP7 490 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SH3KBP1Q96B97 665 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 FAM84AQ96KN4 292 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 TMEM209Q96SK2 561 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SLC38A3Q99624 504 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SLF1Q9BQI6 1058 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 ARHGAP39Q9C0H5 1083 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 CCDC68Q9H2F9 335 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 MROH8Q9H579 483 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 TCP11L1Q9NUJ3 509 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 UCKL1Q9NWZ5 548 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 RBPJLQ9UBG7 517 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 MAFFQ9ULX9 164 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 MAGED2Q9UNF1 606 aaPredicted RBP6.68□□□□□ -1.34
VPS53-212ENST00000572259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS53-212ENST00000572259 IRAK3Q9Y616 596 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 SYNRGQ9UMZ2 1314 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 PLIN4Q96Q06 1357 aa6.68□□□□□ -1.34
VPS53-212ENST00000572259 CENPFP49454 3210 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 A0A087X0M5 115 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 IGKV6D-41A0A0C4DH26 115 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 A0A1B0GX30 115 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 ERICH2A1L162 156 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SLC15A5A6NIM6 579 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 A6NLC8 198 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GOLGA8AA7E2F4 631 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GOLGA8BA8MQT2 603 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GOLGA6L22H0YM25 854 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SMIM22K7EJ46 135 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 MASP2O00187 686 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms