RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ADARP55265 1226 aaKnown RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 CRADDP78560 199 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 GABPAQ06546 454 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 PEX6Q13608 980 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 EMC2Q15006 297 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SLC15A2Q16348 729 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SGSM1Q2NKQ1 1148 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 IFNEQ86WN2 208 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 STKLD1Q8NE28 680 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 OR6B3Q8NGW1 331 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ZSCAN18Q8TBC5 510 aaPredicted RBP11.82□□□□□ -0.52
CLN3-238ENST00000569430 CDHR1Q96JP9 859 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SIKE1Q9BRV8 207 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 TMEM165Q9HC07 324 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ZNF302Q9NR11 478 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 ANKEF1Q9NU02 776 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 FAM49BQ9NUQ9 324 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 THAP1Q9NVV9 213 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 USP18Q9UMW8 372 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 AK5Q9Y6K8 562 aa11.82□□□□□ -0.52
CLN3-238ENST00000569430 SCNN1BP51168 640 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 SNRPFP62306 86 aaKnown RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 NOMO3P69849 1222 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 MMRN1Q13201 1228 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 IL31RAQ8NI17 732 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CCDC138Q96M89 665 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 UNKQ9C0B0 810 aaKnown RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 BFARQ9NZS9 450 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 PRKAG3Q9UGI9 489 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 SNX13Q9Y5W8 968 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 ITGB4P16144 1822 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 ZC3H11AO75152 810 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN3-238ENST00000569430 TMCC1O94876 653 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 TCF4P15884 667 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 GM2AP17900 193 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 GLRBP48167 497 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CHN2P52757 468 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 NCKAP1LP55160 1127 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CDH8P55286 799 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 GTF2BQ00403 316 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 C16orf72Q14CZ0 275 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 TBCCQ15814 346 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 NRF1Q16656 503 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 KIF19Q2TAC6 998 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CNPY1Q3B7I2 92 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CDCA2Q69YH5 1023 aaPredicted RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 CDKL3Q8IVW4 592 aaPredicted RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 LENG9Q96B70 501 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CDRT15Q96T59 188 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 COMMD3-BMI1R4GMX3 469 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 GAKO14976 1311 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 LRP6O75581 1613 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 hCG_1818297A0A087WSY0 165 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CYP3A4P08684 503 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 PSMC3P17980 439 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 EEF1DP29692 281 aaKnown RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 USP46P62068 366 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 TMEM161BQ8NDZ6 487 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 CATSPER1Q8NEC5 780 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 NSUN6Q8TEA1 469 aaKnown RBP11.81□□□□□ -0.52
CLN3-238ENST00000569430 HERPUD2Q9BSE4 406 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 TASP1Q9H6P5 420 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 IL1RL2Q9HB29 575 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 PLA2G4CQ9UP65 541 aa11.81□□□□□ -0.52
CLN3-238ENST00000569430 UMODL1Q5DID0 1318 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 A0A1B0GVG6 124 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CDC16Q13042 620 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 XKR3Q5GH77 459 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 RC3H1Q5TC82 1133 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 HPS6Q86YV9 775 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 NLGN1Q8N2Q7 840 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PIWIL2Q8TC59 973 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 PTPRN2Q92932 1015 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PRR11Q96HE9 360 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 MRPL4Q9BYD3 311 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 BTBD7Q9P203 1132 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CDY2AQ9Y6F7 541 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CDY1Q9Y6F8 540 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 RPS6KL1Q9Y6S9 549 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CFHP08603 1231 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 VIL1P09327 827 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 GYS1P13807 737 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 TFE3P19532 575 aaPredicted RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 MUTP22033 750 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 GARTP22102 1010 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 MIPP30301 263 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 MRPS9P82933 396 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 IL1RL1Q01638 556 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 FOLH1Q04609 750 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 SLC12A1Q13621 1099 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 RALGPS1Q5JS13 557 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLN3-238ENST00000569430 SATL1Q86VE3 508 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 DAW1Q8N136 415 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 CPT1BQ92523 772 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 TMEM39BQ9GZU3 492 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 SEMA6AQ9H2E6 1030 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 AGO4Q9HCK5 861 aaKnown RBP11.8□□□□□ -0.52
CLN3-238ENST00000569430 RABGEF1Q9UJ41 708 aa11.8□□□□□ -0.52
CLN3-238ENST00000569430 PPM1HQ9ULR3 514 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms