RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CDHR1Q96JP9 859 aa15.05■□□□□ 0
VPS35-210ENST00000568784 PPCSQ9HAB8 311 aa15.05■□□□□ 0
VPS35-210ENST00000568784 C10orf71Q711Q0 1435 aa15.05■□□□□ -0
VPS35-210ENST00000568784 A6NHS1 94 aa15.05■□□□□ -0
VPS35-210ENST00000568784 HMGCRP04035 888 aa15.05■□□□□ -0
VPS35-210ENST00000568784 ITGB3P05106 788 aa15.05■□□□□ -0
VPS35-210ENST00000568784 DSG1Q02413 1049 aa15.05■□□□□ -0
VPS35-210ENST00000568784 ZC3H12AQ5D1E8 599 aaKnown RBP15.05■□□□□ -0
VPS35-210ENST00000568784 TRMT10BQ6PF06 316 aaKnown RBP15.05■□□□□ -0
VPS35-210ENST00000568784 NCAPG2Q86XI2 1143 aa15.05■□□□□ -0
VPS35-210ENST00000568784 TMPRSS6Q8IU80 811 aa15.05■□□□□ -0
VPS35-210ENST00000568784 TRIM42Q8IWZ5 723 aa15.05■□□□□ -0
VPS35-210ENST00000568784 PIP4K2CQ8TBX8 421 aa15.05■□□□□ -0
VPS35-210ENST00000568784 RPF1Q9H9Y2 349 aaKnown RBP15.05■□□□□ -0
VPS35-210ENST00000568784 NEMP1O14524 444 aa15.05■□□□□ -0
VPS35-210ENST00000568784 NPM3O75607 178 aaKnown RBP15.05■□□□□ -0
VPS35-210ENST00000568784 NAMPTP43490 491 aa15.05■□□□□ -0
VPS35-210ENST00000568784 TAP1Q03518 808 aa15.05■□□□□ -0
VPS35-210ENST00000568784 CAPSQ13938 189 aa15.05■□□□□ -0
VPS35-210ENST00000568784 STXBP2Q15833 593 aa15.05■□□□□ -0
VPS35-210ENST00000568784 NXNQ6DKJ4 435 aa15.05■□□□□ -0
VPS35-210ENST00000568784 ULK2Q8IYT8 1036 aa15.05■□□□□ -0
VPS35-210ENST00000568784 KIAA0319LQ8IZA0 1049 aa15.05■□□□□ -0
VPS35-210ENST00000568784 UNC5BQ8IZJ1 945 aa15.05■□□□□ -0
VPS35-210ENST00000568784 CLMNQ96JQ2 1002 aa15.05■□□□□ -0
VPS35-210ENST00000568784 APOC4-APOC2K7ER74 178 aa15.04■□□□□ -0
VPS35-210ENST00000568784 TRPA1O75762 1119 aa15.04■□□□□ -0
VPS35-210ENST00000568784 APOC2P02655 101 aa15.04■□□□□ -0
VPS35-210ENST00000568784 ANPEPP15144 967 aa15.04■□□□□ -0
VPS35-210ENST00000568784 TGFB2P61812 414 aa15.04■□□□□ -0
VPS35-210ENST00000568784 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.04■□□□□ -0
VPS35-210ENST00000568784 LPCAT4Q643R3 524 aa15.04■□□□□ -0
VPS35-210ENST00000568784 NME8Q8N427 588 aa15.04■□□□□ -0
VPS35-210ENST00000568784 ATP2A3Q93084 1043 aa15.04■□□□□ -0
VPS35-210ENST00000568784 RSAD1Q9HA92 442 aa15.04■□□□□ -0
VPS35-210ENST00000568784 SMYD2Q9NRG4 433 aa15.04■□□□□ -0
VPS35-210ENST00000568784 MYO18AQ92614 2054 aaKnown RBP15.04■□□□□ -0
VPS35-210ENST00000568784 DCAF8L1A6NGE4 600 aa15.04■□□□□ -0
VPS35-210ENST00000568784 KCNA2P16389 499 aa15.04■□□□□ -0
VPS35-210ENST00000568784 GMPRP36959 345 aa15.04■□□□□ -0
VPS35-210ENST00000568784 EML3Q32P44 896 aa15.04■□□□□ -0
VPS35-210ENST00000568784 RELL1Q8IUW5 271 aa15.04■□□□□ -0
VPS35-210ENST00000568784 HACE1Q8IYU2 909 aa15.04■□□□□ -0
VPS35-210ENST00000568784 PHACTR1Q9C0D0 580 aa15.04■□□□□ -0
VPS35-210ENST00000568784 TAGLN3Q9UI15 199 aa15.04■□□□□ -0
VPS35-210ENST00000568784 TTLL3Q9Y4R7 772 aa15.04■□□□□ -0
VPS35-210ENST00000568784 LIN7AO14910 233 aaPredicted RBP15.04■□□□□ -0
VPS35-210ENST00000568784 DGKIO75912 1065 aa15.04■□□□□ -0
VPS35-210ENST00000568784 ERBB2P04626 1255 aa15.04■□□□□ -0
VPS35-210ENST00000568784 EDN1P05305 212 aa15.04■□□□□ -0
VPS35-210ENST00000568784 DLDP09622 509 aaKnown RBP15.04■□□□□ -0
VPS35-210ENST00000568784 LRRC38Q5VT99 294 aa15.04■□□□□ -0
VPS35-210ENST00000568784 SLC44A1Q8WWI5 657 aa15.04■□□□□ -0
VPS35-210ENST00000568784 FAM149B1Q96BN6 582 aa15.04■□□□□ -0
VPS35-210ENST00000568784 ANKRD27Q96NW4 1050 aa15.04■□□□□ -0
VPS35-210ENST00000568784 PORCNQ9H237 461 aa15.04■□□□□ -0
VPS35-210ENST00000568784 KCNG1Q9UIX4 513 aa15.04■□□□□ -0
VPS35-210ENST00000568784 B4GALT5O43286 388 aa15.03■□□□□ -0
VPS35-210ENST00000568784 PROCP04070 461 aa15.03■□□□□ -0
VPS35-210ENST00000568784 C15orf39Q6ZRI6 1047 aa15.03■□□□□ -0
VPS35-210ENST00000568784 WDTC1Q8N5D0 677 aa15.03■□□□□ -0
VPS35-210ENST00000568784 RNF148Q8N7C7 305 aa15.03■□□□□ -0
VPS35-210ENST00000568784 AGAP3Q96P47 875 aa15.03■□□□□ -0
VPS35-210ENST00000568784 MAN1C1Q9NR34 630 aa15.03■□□□□ -0
VPS35-210ENST00000568784 STX18Q9P2W9 335 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 HMGXB4Q9UGU5 601 aa15.03■□□□□ -0
VPS35-210ENST00000568784 FIS1Q9Y3D6 152 aa15.03■□□□□ -0
VPS35-210ENST00000568784 MSX2P35548 267 aaPredicted RBP15.03■□□□□ -0
VPS35-210ENST00000568784 RALGPS1Q5JS13 557 aa15.03■□□□□ -0
VPS35-210ENST00000568784 NBPF12Q5TAG4 269 aaPredicted RBP15.03■□□□□ -0
VPS35-210ENST00000568784 BRSK2Q8IWQ3 736 aa15.03■□□□□ -0
VPS35-210ENST00000568784 ENDOVQ8N8Q3 282 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.03■□□□□ -05e-7■■□□□ 13.8
VPS35-210ENST00000568784 PGBD4Q96DM1 585 aa15.03■□□□□ -0
VPS35-210ENST00000568784 PPM1HQ9ULR3 514 aa15.03■□□□□ -0
VPS35-210ENST00000568784 MYH9P35579 1960 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 A6NJR5 290 aa15.03■□□□□ -0
VPS35-210ENST00000568784 KIF3CO14782 793 aa15.03■□□□□ -0
VPS35-210ENST00000568784 APOL1O14791 398 aa15.03■□□□□ -0
VPS35-210ENST00000568784 LSM8O95777 96 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 SP2Q02086 613 aa15.03■□□□□ -0
VPS35-210ENST00000568784 FSTL1Q12841 308 aa15.03■□□□□ -0
VPS35-210ENST00000568784 PRKD1Q15139 912 aaPredicted RBP15.03■□□□□ -0
VPS35-210ENST00000568784 FASTKD1Q53R41 847 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 VWA5B1Q5TIE3 1220 aa15.03■□□□□ -0
VPS35-210ENST00000568784 ARMC3Q5W041 872 aa15.03■□□□□ -0
VPS35-210ENST00000568784 ST13P4Q8IZP2 240 aaPredicted RBP15.03■□□□□ -0
VPS35-210ENST00000568784 ZNF398Q8TD17 642 aa15.03■□□□□ -0
VPS35-210ENST00000568784 WDR83Q9BRX9 315 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 ACAD9Q9H845 621 aa15.03■□□□□ -0
VPS35-210ENST00000568784 XAB2Q9HCS7 855 aaKnown RBP15.03■□□□□ -0
VPS35-210ENST00000568784 LNPEPQ9UIQ6 1025 aa15.03■□□□□ -0
VPS35-210ENST00000568784 GOLGA8QA0A0J9YX86 632 aa15.02■□□□□ -0
VPS35-210ENST00000568784 GOLGA8OA6NCC3 632 aa15.02■□□□□ -0
VPS35-210ENST00000568784 SIGLEC16A6NMB1 481 aa15.02■□□□□ -0
VPS35-210ENST00000568784 GOLGA8NF8WBI6 632 aa15.02■□□□□ -0
VPS35-210ENST00000568784 BTAF1O14981 1849 aa15.02■□□□□ -0
VPS35-210ENST00000568784 AHCYL1O43865 530 aa15.02■□□□□ -0
VPS35-210ENST00000568784 RARBP10826 455 aa15.02■□□□□ -0
VPS35-210ENST00000568784 COL5A3P25940 1745 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms