RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CKMP06732 381 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 KRT9P35527 623 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 AVPR1AP37288 418 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 PDE6CP51160 858 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 GPC5P78333 572 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 PDCLQ13371 301 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 HECTD3Q5T447 861 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 IRF2BP2Q7Z5L9 587 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 WBP2Q969T9 261 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 HSFY1Q96LI6 401 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 CPXM1Q96SM3 734 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 MIS12Q9H081 205 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 LHX5Q9H2C1 402 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 EPHX3Q9H6B9 360 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 TLR8Q9NR97 1041 aaKnown RBP20.55■□□□□ 0.88
CLN3-225ENST00000566824 ST7Q9NRC1 585 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 TDP1Q9NUW8 608 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 SMPD4Q9NXE4 827 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 NAGPAQ9UK23 515 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 SOBPA7XYQ1 873 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 E5RJQ4 531 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 RARGP13631 454 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 DAOAP59103 153 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 ZXDAP98168 799 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 FMO1Q01740 532 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 SCUBE3Q8IX30 993 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 SIX6OS1Q8N1H7 587 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 STK32AQ8WU08 396 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 NXPE3Q969Y0 559 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 PIWIL1Q96J94 861 aaKnown RBP20.54■□□□□ 0.88
CLN3-225ENST00000566824 ZFYVE19Q96K21 471 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 ZFRQ96KR1 1074 aaKnown RBP20.54■□□□□ 0.88
CLN3-225ENST00000566824 PCDHB18PQ96TA0 734 aa20.54■□□□□ 0.88
CLN3-225ENST00000566824 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-225ENST00000566824 DLL1O00548 723 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 PAPSS1O43252 624 aaPredicted RBP20.53■□□□□ 0.88
CLN3-225ENST00000566824 DCXO43602 365 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 TLR5O60602 858 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 YWHAGP61981 247 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLN3-225ENST00000566824 PLCB2Q00722 1185 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CDR2Q01850 454 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 PTPN20Q4JDL3 420 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 TMEM110Q86TL2 294 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 MFSD6LQ8IWD5 586 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 TTC16Q8NEE8 873 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CPLX3Q8WVH0 158 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 ASIC4Q96FT7 647 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 GKN1Q9NS71 199 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CPQQ9Y646 472 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 PI4K2BG5E9Z4 385 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 SCAMP3O14828 347 aaKnown RBP20.53■□□□□ 0.88
CLN3-225ENST00000566824 ERBB2P04626 1255 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 GYPCP04921 128 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 MBL2P11226 248 aaPredicted RBP20.53■□□□□ 0.88
CLN3-225ENST00000566824 CDH5P33151 784 aaPredicted RBP20.53■□□□□ 0.88
CLN3-225ENST00000566824 SLC7A9P82251 487 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 TAF5Q15542 800 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 C2CD6Q53TS8 623 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 FIGNQ5HY92 759 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CELF5Q8N6W0 485 aaKnown RBP20.53■□□□□ 0.88
CLN3-225ENST00000566824 SH3RF2Q8TEC5 729 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 EDEM1Q92611 657 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CYLDQ9NQC7 956 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 CNGB3Q9NQW8 809 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 ARHGAP26Q9UNA1 814 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 DUSP12Q9UNI6 340 aa20.53■□□□□ 0.88
CLN3-225ENST00000566824 DPYSL4O14531 572 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 FYNP06241 537 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 PSMC3P17980 439 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 TUBP50607 506 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 NOMO3P69849 1222 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 USP4Q13107 963 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 ZNF268Q14587 947 aaPredicted RBP20.52■□□□□ 0.87
CLN3-225ENST00000566824 ZNF77Q15935 545 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 BSPRYQ5W0U4 402 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 SARM1Q6SZW1 724 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 SCML4Q8N228 414 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 CPA5Q8WXQ8 436 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 EDAQ92838 391 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 PPP1R13BQ96KQ4 1090 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 SYT11Q9BT88 431 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 EDEM3Q9BZQ6 932 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 PDCL3Q9H2J4 239 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 ZMYM5Q9UJ78 669 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 MYO6Q9UM54 1294 aa20.52■□□□□ 0.87
CLN3-225ENST00000566824 LEFTY2O00292 366 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 CBFA2T2O43439 604 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 CYP1A1P04798 512 aaPredicted RBP20.51■□□□□ 0.87
CLN3-225ENST00000566824 SRFP11831 508 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 SKILP12757 684 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 FERP16591 822 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 GDI1P31150 447 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 GOLGA8FQ08AF8 430 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 GOLGA8DPQ0D2H9 430 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 FCHO2Q0JRZ9 810 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 C10orf120Q5SQS8 335 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 NAA35Q5VZE5 725 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 VSTM4Q8IW00 320 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 TMEM35BQ8NCS4 154 aa20.51■□□□□ 0.87
CLN3-225ENST00000566824 BPIFB1Q8TDL5 484 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms