RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 HAS3O00219 553 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PIRO00625 290 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TRDMT1O14717 391 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 CHUKO15111 745 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PAPSS1O43252 624 aaPredicted RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 MGRN1O60291 552 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 HNRNPCL1O60812 293 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 EDF1O60869 148 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 DAB1O75553 588 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 DCTN3O75935 186 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 ITGBL1O95965 494 aaPredicted RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 ZBED1O96006 694 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 CYP2C9P11712 490 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TPSB2P20231 275 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 CA4P22748 312 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 WARSP23381 471 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 HOXA11P31270 313 aaPredicted RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 FOXN2P32314 431 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 ATP5OP48047 213 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TAF6P49848 677 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 NCALDP61601 193 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 BASP1P80723 227 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 PDE4CQ08493 712 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 BNIP1Q12981 228 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TPSAB1Q15661 275 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SNCBQ16143 134 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 BBS9Q3SYG4 887 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SV2CQ496J9 727 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 EFHC1Q5JVL4 640 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 FBXO47Q5MNV8 452 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 FNBP1LQ5T0N5 605 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PPP1R26Q5T8A7 1209 aaPredicted RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 LGSNQ5TDP6 509 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 HHATQ5VTY9 493 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 ICE2Q659A1 982 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 CGB2Q6NT52 195 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PMF1Q6P1K2 205 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 CHSY1Q86X52 802 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PARP9Q8IXQ6 854 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 HACE1Q8IYU2 909 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 NME8Q8N427 588 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TOP6BLQ8N6T0 577 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PQLC3Q8N755 202 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PLD5Q8N7P1 536 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 FAM71DQ8N9W8 422 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 ANKRD52Q8NB46 1076 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 OR6B3Q8NGW1 331 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 GDAP1Q8TB36 358 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 LRRC8CQ8TDW0 803 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 FBF1Q8TES7 1133 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 FAM172AQ8WUF8 416 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 DCAKDQ8WVC6 231 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SLC44A1Q8WWI5 657 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 KHSRPQ92945 711 aaKnown RBP eCLIP6.51□□□□□ -1.37
CLN3-223ENST00000566472 TNIP3Q96KP6 325 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 QKIQ96PU8 341 aaKnown RBP eCLIP6.51□□□□□ -1.37
CLN3-223ENST00000566472 PPP1R16BQ96T49 567 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 WDR83Q9BRX9 315 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 SNRNP25Q9BV90 132 aaKnown RBP6.51□□□□□ -1.37
CLN3-223ENST00000566472 KATNAL1Q9BW62 490 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 PITPNM3Q9BZ71 974 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 VPS11Q9H270 941 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TXLNGQ9NUQ3 528 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SNTG2Q9NY99 539 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 Q9Y3F1 56 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SNX9Q9Y5X1 595 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 TEX264Q9Y6I9 313 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 USH1CQ9Y6N9 552 aa6.51□□□□□ -1.37
CLN3-223ENST00000566472 SCN4AP35499 1836 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 A8MXQ7 604 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 XPO1O14980 1071 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 KCNN4O15554 427 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CSDE1O75534 798 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 GCATO75600 419 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 WFS1O76024 890 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 RECQL4O94761 1208 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 UBOX5O94941 541 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 INHBAP08476 426 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 DHRS4L1P0CG22 281 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SMIM10L2AP0DMW4 78 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SMIM10L2BP0DMW5 78 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 TROVE2P10155 538 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLN3-223ENST00000566472 MLNP12872 115 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CCNB1P14635 433 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 NQO1P15559 274 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 YBX3P16989 372 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLN3-223ENST00000566472 IL4RP24394 825 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 PRKCHP24723 683 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CYP2F1P24903 491 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 LRPAP1P30533 357 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ALDH3A1P30838 453 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SSTR1P30872 391 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SLC8A1P32418 973 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 FDFT1P37268 417 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CCNFP41002 786 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ELK3P41970 407 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 RGS7P49802 495 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 PSEN2P49810 448 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 AIF1P55008 147 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 HDAC4P56524 1084 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms