RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DDX42Q86XP3 938 aaKnown RBP eCLIP11.44□□□□□ -0.58
VPS39-208ENST00000564994 FBXL13Q8NEE6 735 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SECISBP2LQ93073 1101 aaKnown RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 TATDN2Q93075 761 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SMARCE1Q969G3 411 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 EXOC4Q96A65 974 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 TIGD1Q96MW7 591 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 HHIPQ96QV1 700 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 ARID3AQ99856 593 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 FBXO44Q9H4M3 255 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 NMUR1Q9HB89 426 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 CISHQ9NSE2 258 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 DLL3Q9NYJ7 618 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 GMEB2Q9UKD1 530 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 RAB23Q9ULC3 237 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SLC8A2Q9UPR5 921 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SCML2Q9UQR0 700 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 LAMA1P25391 3075 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 CCDC163A0A0D9SF12 145 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 SLC16A3O15427 465 aaKnown RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 CYP26A1O43174 497 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 GREM1O60565 184 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 SMC2O95347 1197 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 RETP07949 1114 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 ACO1P21399 889 aaKnown RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 BMP6P22004 513 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 RAD23BP54727 409 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 SEC13P55735 322 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 FKBP3Q00688 224 aaKnown RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 DMC1Q14565 340 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 RSPO4Q2I0M5 234 aaPredicted RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 DCAF17Q5H9S7 520 aaPredicted RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 LY6G5CQ5SRR4 150 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 BBS7Q8IWZ6 715 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 CAMKK1Q8N5S9 505 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 FAM160A2Q8N612 972 aaPredicted RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 GPR161Q8N6U8 529 aaKnown RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 SLC4A11Q8NBS3 891 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 CCDC150Q8NCX0 1101 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 USP33Q8TEY7 942 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 GAB3Q8WWW8 586 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 FAXDC2Q96IV6 333 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 KLF16Q9BXK1 252 aaPredicted RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 PNPLA8Q9NP80 782 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 CYLDQ9NQC7 956 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 TLR8Q9NR97 1041 aaKnown RBP11.43□□□□□ -0.58
VPS39-208ENST00000564994 TBC1D14Q9P2M4 693 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 MAN1B1Q9UKM7 699 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 USP18Q9UMW8 372 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 COQ4Q9Y3A0 265 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 NUP205Q92621 2012 aa11.43□□□□□ -0.58
VPS39-208ENST00000564994 THADAQ6YHU6 1953 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 A0A1W2PQH9 124 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 MDM4O15151 490 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 STX10O60499 249 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 GADD45BO75293 160 aaPredicted RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 RPP40O75818 363 aaKnown RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 ADH1CP00326 375 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 IRF1P10914 325 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ADH5P11766 374 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 KIF11P52732 1056 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 LRRC63Q05C16 580 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 PUM1Q14671 1186 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS39-208ENST00000564994 C2orf27AQ580R0 203 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 TCERG1LQ5VWI1 586 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 CEP68Q76N32 757 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ERMP1Q7Z2K6 904 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 SCD5Q86SK9 330 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 KBTBD6Q86V97 674 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 TMEM25Q86YD3 366 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ETFBKMTQ8IXQ9 262 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ELOA2Q8IYF1 753 aaPredicted RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 PHTF2Q8N3S3 785 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 SLC35C1Q96A29 364 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 ACDQ96AP0 544 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 HEXIM2Q96MH2 286 aaKnown RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 PNKPQ96T60 521 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 TSG101Q99816 390 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 DUSP9Q99956 384 aaKnown RBP11.42□□□□□ -0.58
VPS39-208ENST00000564994 DUSP16Q9BY84 665 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 NUDT5Q9UKK9 219 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 SH3BP1Q9Y3L3 701 aa11.42□□□□□ -0.58
VPS39-208ENST00000564994 CNOT1A5YKK6 2376 aaKnown RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 A0A0A0MRY4 1105 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 AXIN1O15169 862 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 KAT7O95251 611 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 APBB3O95704 486 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 RARGP13631 454 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 HNRNPLP14866 589 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS39-208ENST00000564994 TRIM21P19474 475 aaKnown RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 ATP5C1P36542 298 aaKnown RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 EIF2DP41214 584 aaKnown RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 LMNB2Q03252 620 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 GAD2Q05329 585 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 KDSRQ06136 332 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 CUL2Q13617 745 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 EMC10Q5UCC4 262 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 ARHGAP17Q68EM7 881 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 HTR3DQ70Z44 454 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms