RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 STK4Q13043 487 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 HSF5Q4G112 596 aaPredicted RBP17.87■□□□□ 0.45
CLN3-211ENST00000564091 SH3PXD2AQ5TCZ1 1133 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 SNX30Q5VWJ9 437 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 RESP18Q5W5W9 173 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 TMEM25Q86YD3 366 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 ETFBKMTQ8IXQ9 262 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 PGBD3Q8N328 593 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 PHTF2Q8N3S3 785 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 ZMIZ2Q8NF64 920 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 WHAMMQ8TF30 809 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 SMARCD1Q96GM5 515 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 TNIP3Q96KP6 325 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 SMOQ99835 787 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 BACH2Q9BYV9 841 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 NACA2Q9H009 215 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 TMEM9BQ9NQ34 198 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 KRT82Q9NSB4 513 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 HMGXB4Q9UGU5 601 aa17.87■□□□□ 0.45
CLN3-211ENST00000564091 MBD1Q9UIS9 605 aaPredicted RBP17.87■□□□□ 0.45
CLN3-211ENST00000564091 KLRC4O43908 158 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 TULP3O75386 442 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 TBX18O95935 607 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 ZDHHC11BP0C7U3 371 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 AP3M2P53677 418 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 CLDN10P78369 228 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 ANO4Q32M45 955 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 MAP7D1Q3KQU3 841 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 UAP1L1Q3KQV9 507 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 BTBD8Q5XKL5 378 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 LPCAT2Q7L5N7 544 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 KIAA0895Q8NCT3 520 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 GOLGA5Q8TBA6 731 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 SLC2A14Q8TDB8 520 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 TMEM74BQ9NUR3 256 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 DMAC2Q9NW81 257 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 DEC1Q9P2X7 70 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 SERTAD1Q9UHV2 236 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 DENND4CQ5VZ89 1909 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 ABCA7Q8IZY2 2146 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 SPAG17Q6Q759 2223 aa17.86■□□□□ 0.45
CLN3-211ENST00000564091 FAM92AA1XBS5 289 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 HOXC11O43248 304 aaPredicted RBP17.85■□□□□ 0.45
CLN3-211ENST00000564091 OBSL1O75147 1896 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 ZSCAN22P10073 491 aaPredicted RBP17.85■□□□□ 0.45
CLN3-211ENST00000564091 WASP42768 502 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 TUBP50607 506 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 MAP3K7CLP57077 242 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 ZNF252P-AS1Q0IIN9 211 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 TRIM61Q5EBN2 209 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 RALGAPA1Q6GYQ0 2036 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 SPOPLQ6IQ16 392 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 CEP57L1Q8IYX8 460 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 C12orf29Q8N999 325 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 OTUB2Q96DC9 234 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 SPACA7Q96KW9 195 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.85■□□□□ 0.45
CLN3-211ENST00000564091 SPHK2Q9NRA0 654 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 HCN2Q9UL51 889 aa17.85■□□□□ 0.45
CLN3-211ENST00000564091 CHD6Q8TD26 2715 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 TLR5O60602 858 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 F13A1P00488 732 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 SPINK2P20155 84 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 NDST1P52848 882 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 FOXC1Q12948 553 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 SGSM1Q2NKQ1 1148 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 C10orf76Q5T2E6 689 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 MIB1Q86YT6 1006 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 ZNF513Q8N8E2 541 aaPredicted RBP17.84■□□□□ 0.45
CLN3-211ENST00000564091 ERLEC1Q96DZ1 483 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 PAGE5Q96GU1 130 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 FAM49BQ9NUQ9 324 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 COMMD8Q9NX08 183 aa17.84■□□□□ 0.45
CLN3-211ENST00000564091 ATXN2Q99700 1313 aaKnown RBP17.83■□□□□ 0.44
CLN3-211ENST00000564091 ZNF638Q14966 1978 aaKnown RBP17.83■□□□□ 0.44
CLN3-211ENST00000564091 GREB1Q4ZG55 1949 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 TOP3BO95985 862 aaKnown RBP17.83■□□□□ 0.44
CLN3-211ENST00000564091 SLFN14P0C7P3 912 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 P4HA1P13674 534 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 MAPK8P45983 427 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 PKP1Q13835 747 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 ZACNQ401N2 412 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 KMT5BQ4FZB7 885 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 SV2AQ7L0J3 742 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 GPRIN1Q7Z2K8 1008 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 SYT12Q8IV01 421 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 SLC9A9Q8IVB4 645 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 CRYBG2Q8N1P7 616 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 DEFB119Q8N690 84 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 TERB1Q8NA31 727 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 DEFB124Q8NES8 71 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 JAKMIP2Q96AA8 810 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 KCTD10Q9H3F6 313 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 CSNK1G1Q9HCP0 422 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 EXOC1Q9NV70 894 aa17.83■□□□□ 0.44
CLN3-211ENST00000564091 EVLQ9UI08 416 aaPredicted RBP17.83■□□□□ 0.44
CLN3-211ENST00000564091 ACTN4O43707 911 aaKnown RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 GREM1O60565 184 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 NR3C1P04150 777 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 RPN1P04843 607 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms