RNA–Protein interactions for RNA: ENST00000561187.1

SNRPA1-215, Transcript of small nuclear ribonucleoprotein polypeptide A', human

TSL 2

Gene SNRPA1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRPA1-215	ENST00000561187	SGSM1	Q2NKQ1	1148 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	PLA2G2C	Q5R387	149 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	STPG1	Q5TH74	334 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	TMEM92	Q6UXU6	159 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	GPRIN1	Q7Z2K8	1008 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	CCDC26	Q8TAB7	109 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	TWNK	Q96RR1	684 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	HPSE	Q9Y251	543 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	PCDHGA5	Q9Y5G8	931 aa		28.64	■■■□□ 2.18
SNRPA1-215	ENST00000561187	SGK1	O00141	431 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CALU	O43852	315 aa	Predicted RBP	28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	RHOBTB1	O94844	696 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CRY1	Q16526	586 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TMC2	Q8TDI7	906 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	VPS45	Q9NRW7	570 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TBC1D14	Q9P2M4	693 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ZDHHC9	Q9Y397	364 aa		28.63	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CACNA1B	Q00975	2339 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	E2F8	A0AVK6	867 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ASS1	P00966	412 aa	Known RBP	28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CD58	P19256	250 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	NR2F2	P24468	414 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	GCLM	P48507	274 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	VAMP7	P51809	220 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	KRT85	P78386	507 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ANO4	Q32M45	955 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	USP39	Q53GS9	565 aa	Known RBP	28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	IL17RC	Q8NAC3	791 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	RLN3	Q8WXF3	142 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ERLEC1	Q96DZ1	483 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CNOT6L	Q96LI5	555 aa	Known RBP	28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	EDEM2	Q9BV94	578 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	THADA	Q6YHU6	1953 aa		28.62	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CHD8	Q9HCK8	2581 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CYP26A1	O43174	497 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TLR5	O60602	858 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CAVIN2	O95810	425 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TBX18	O95935	607 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	FAM200B	P0CF97	657 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	RNF43	Q68DV7	783 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	RASSF3	Q86WH2	238 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	APOBEC3G	Q9HC16	384 aa	Known RBP	28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	IL37	Q9NZH6	218 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	BCCIP	Q9P287	314 aa	Known RBP eCLIP	28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	USP25	Q9UHP3	1055 aa		28.61	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TRIM24	O15164	1050 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ZDHHC11B	P0C7U3	371 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	MRPS21	P82921	87 aa	Known RBP	28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	GAD2	Q05329	585 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	PMS2CL	Q68D20	193 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TAS1R2	Q8TE23	839 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	HMGB4	Q8WW32	186 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	GOLPH3L	Q9H4A5	285 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	NUDT5	Q9UKK9	219 aa		28.6	■■■□□ 2.17
SNRPA1-215	ENST00000561187	NUP205	Q92621	2012 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	MYO18A	Q92614	2054 aa	Known RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	BCLAF3	A2AJT9	711 aa	Known RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	MDM4	O15151	490 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CHRM1	P11229	460 aa	Predicted RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	EIF2D	P41214	584 aa	Known RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	GRIA2	P42262	883 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	DHPS	P49366	369 aa	Predicted RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TUB	P50607	506 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	LIMK1	P53667	647 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	PPP3CA	Q08209	521 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	BTBD8	Q5XKL5	378 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	ARMCX6	Q7L4S7	300 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TMEM25	Q86YD3	366 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	FRMD1	Q8N878	549 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TAF4B	Q92750	862 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CCDC47	Q96A33	483 aa	Known RBP	28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	IMPG2	Q9BZV3	1241 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TRAF3IP3	Q9Y228	551 aa		28.59	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TCRBV21S2A2	A0A5A6	115 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TBC1D3B	A6NDS4	549 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	KIR2DL1	P43626	348 aa	Predicted RBP	28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	SNX30	Q5VWJ9	437 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CLEC20A	Q6ZU45	233 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CYP2U1	Q7Z449	544 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	UNC93A	Q86WB7	457 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	FAM186B	Q8IYM0	893 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	CRYBG2	Q8N1P7	616 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	PHTF2	Q8N3S3	785 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	KIAA1958	Q8N8K9	716 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	EEF2KMT	Q96G04	330 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	FBXO44	Q9H4M3	255 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	GDPD2	Q9HCC8	539 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	TLR8	Q9NR97	1041 aa	Known RBP	28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	SPHK2	Q9NRA0	654 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	OSER1	Q9NX31	292 aa		28.58	■■■□□ 2.17
SNRPA1-215	ENST00000561187	MAP1B	P46821	2468 aa	Known RBP	28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	FAM92A	A1XBS5	289 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	PATE3	B3GLJ2	98 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	ADAM23	O75077	832 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	TULP3	O75386	442 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	ALDH1A2	O94788	518 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	RHOBTB3	O94955	611 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	KIF20A	O95235	890 aa		28.57	■■■□□ 2.16
SNRPA1-215	ENST00000561187	MYL1	P05976	194 aa		28.57	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms