RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 GJB4Q9NTQ9 266 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 AATFQ9NY61 560 aaKnown RBP eCLIP2.76□□□□□ -1.97
SPG11-223ENST00000560858 RAI14Q9P0K7 980 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 KIAA1522Q9P206 1035 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.76□□□□□ -1.97
SPG11-223ENST00000560858 KCNE5Q9UJ90 142 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MAN1B1Q9UKM7 699 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 BTBD3Q9Y2F9 522 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 PPP2R2CQ9Y2T4 447 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 RIPOR2Q9Y4F9 1068 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 V9GYY5 206 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 ZNF646O15015 1829 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 RGPD3A6NKT7 1758 aaPredicted RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 RGPD4Q7Z3J3 1758 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 RBBP6Q7Z6E9 1792 aaKnown RBP2.76□□□□□ -1.97
SPG11-223ENST00000560858 LY75O60449 1722 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 LTBP1Q14766 1721 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 MYH10P35580 1976 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 C10orf71Q711Q0 1435 aa2.76□□□□□ -1.97
SPG11-223ENST00000560858 BTAF1O14981 1849 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 SLX4Q8IY92 1834 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ZNF532Q9HCE3 1301 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 SYNRGQ9UMZ2 1314 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TULP2O00295 520 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 MAP2K7O14733 419 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 YY2O15391 372 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 PDE8AO60658 829 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 PRAMEF4O60810 478 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 PDE8BO95263 885 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 DEXIO95424 95 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 A1BGP04217 495 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 UQCRFS1P1P0C7P4 283 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TOP1P11387 765 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 IL2RBP14784 551 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 CD40P25942 277 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 MARCKSP29966 332 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 IARSP41252 1262 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 PHKA1P46020 1223 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 FLT3LGP49771 235 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TOB1P50616 345 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 PLCD1P51178 756 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 MEF2AQ02078 507 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 TRDNQ13061 729 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 IFIT5Q13325 482 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 PNOCQ13519 176 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 CUL4BQ13620 913 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TUBB2AQ13885 445 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TRIM14Q14142 442 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 RASA3Q14644 834 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 PUM3Q15397 648 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 CYP2A13Q16696 494 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 CFAP100Q494V2 611 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 FAM47AQ5JRC9 791 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 JAKMIP3Q5VZ66 844 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 SPECC1LQ69YQ0 1117 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 AWAT2Q6E213 333 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 TMED8Q6PL24 325 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 TMCO3Q6UWJ1 677 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 OLFM4Q6UX06 510 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 KIF6Q6ZMV9 814 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ZNF771Q7L3S4 317 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 TECPR1Q7Z6L1 1165 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 MICU3Q86XE3 530 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 FOXP4Q8IVH2 680 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 DIS3L2Q8IYB7 885 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 IQUBQ8NA54 791 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 CNNM3Q8NE01 707 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 MNS1Q8NEH6 495 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 SEMA6DQ8NFY4 1073 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ZCRB1Q8TBF4 217 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 RSAD2Q8WXG1 361 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ARMC5Q96C12 935 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 WDR24Q96S15 920 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 STRBPQ96SI9 672 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 GMLQ99445 158 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 BAG1Q99933 345 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 TUBB2BQ9BVA1 445 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 CARD6Q9BX69 1037 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 RNF26Q9BY78 433 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 KRT23Q9C075 422 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ANLNQ9NQW6 1124 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 FANCLQ9NW38 375 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 PSD3Q9NYI0 1048 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 CALCOCO1Q9P1Z2 691 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ADD3Q9UEY8 706 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 HOOK1Q9UJC3 728 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 ZNF112Q9UJU3 913 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ANAPC4Q9UJX5 808 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 RAB21Q9UL25 225 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 NAP1L2Q9ULW6 460 aaPredicted RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 MTO1Q9Y2Z2 717 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 NFE2L3Q9Y4A8 694 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 SRPRBQ9Y5M8 271 aaKnown RBP2.75□□□□□ -1.97
SPG11-223ENST00000560858 LOXHD1Q8IVV2 1947 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 KAT6BQ8WYB5 2073 aa2.75□□□□□ -1.97
SPG11-223ENST00000560858 ROBO3Q96MS0 1386 aa2.74□□□□□ -1.97
SPG11-223ENST00000560858 PDS5AQ29RF7 1337 aaKnown RBP2.74□□□□□ -1.97
SPG11-223ENST00000560858 MROH5Q6ZUA9 1318 aa2.74□□□□□ -1.97
SPG11-223ENST00000560858 THSD7AQ9UPZ6 1657 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms