RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PRKCIP41743 596 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 LHX1P48742 406 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 LILRA4P59901 499 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 PPM1JQ5JR12 505 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 HEATR6Q6AI08 1181 aaKnown RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 TXNDC11Q6PKC3 985 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 KIAA1328Q86T90 577 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 UNC93AQ86WB7 457 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 YAF2Q8IY57 180 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 SPEM1Q8N4L4 309 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 LEMD2Q8NC56 503 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 RBBP8NLQ8NC74 664 aaPredicted RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 OR6B3Q8NGW1 331 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 CSGALNACT1Q8TDX6 532 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 FAM84AQ96KN4 292 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 TNIP3Q96KP6 325 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 HEXIM2Q96MH2 286 aaKnown RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 KREMEN1Q96MU8 473 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 LRRC3BQ96PB8 259 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 NT5C1AQ9BXI3 368 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 LRRC3Q9BY71 257 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 HAUS4Q9H6D7 363 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 APOBEC3GQ9HC16 384 aaKnown RBP12.46□□□□□ -0.41
LDLR-212ENST00000560467 SEMA4GQ9NTN9 838 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 ZKSCAN5Q9Y2L8 839 aa12.46□□□□□ -0.41
LDLR-212ENST00000560467 A8MXQ7 604 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 GDF9O60383 454 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 SOAT2O75908 522 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 CD19P15391 556 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 KCNA4P22459 653 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 GNA15P30679 374 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 ASPAP45381 313 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 KPNA1P52294 538 aaPredicted RBP12.45□□□□□ -0.42
LDLR-212ENST00000560467 SLC8A3P57103 927 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 SNX16P57768 344 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 CCZ1BP86790 482 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 CCZ1P86791 482 aaPredicted RBP12.45□□□□□ -0.42
LDLR-212ENST00000560467 YWHAHQ04917 246 aaPredicted RBP12.45□□□□□ -0.42
LDLR-212ENST00000560467 MAPK8IP2Q13387 824 aaPredicted RBP12.45□□□□□ -0.42
LDLR-212ENST00000560467 STILQ15468 1287 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 DPY19L2P1Q6NXN4 242 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 TRIM72Q6ZMU5 477 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 PRR23CQ6ZRP0 262 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 IRF2BP2Q7Z5L9 587 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 TTC9BQ8N6N2 239 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 MSANTD4Q8NCY6 345 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 SPATA18Q8TC71 538 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 TMEM176AQ96HP8 235 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 ZFYVE19Q96K21 471 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 AGPAT1Q99943 283 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 MAFFQ9ULX9 164 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 CNOT1A5YKK6 2376 aaKnown RBP12.45□□□□□ -0.42
LDLR-212ENST00000560467 USP24Q9UPU5 2620 aa12.45□□□□□ -0.42
LDLR-212ENST00000560467 SOWAHDA6NJG2 315 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 EIF3CLB5ME19 914 aaKnown RBP12.44□□□□□ -0.42
LDLR-212ENST00000560467 SPECC1L-ADORA2AF8WAN1 911 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 M0QZQ0 153 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 CHADO15335 359 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 THAP12O43422 761 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 LRP3O75074 770 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 TACC1O75410 805 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 OAZ2O95190 189 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 NDUFA10O95299 355 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 CYP11B1P15538 503 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 FECHP22830 423 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 PCSK1P29120 753 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 CTHP32929 405 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 CDR1P51861 262 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 KIF11P52732 1056 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 FCHO2Q0JRZ9 810 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 DUSP4Q13115 394 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 LRRC32Q14392 662 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 ST3GAL2Q16842 350 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 WDR59Q6PJI9 974 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 ARID3BQ8IVW6 561 aaPredicted RBP12.44□□□□□ -0.42
LDLR-212ENST00000560467 ADGRF2Q8IZF7 708 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 ATAD1Q8NBU5 361 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 KAT5Q92993 513 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 SENP8Q96LD8 212 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 NOX5Q96PH1 765 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 EIF3CQ99613 913 aaKnown RBP12.44□□□□□ -0.42
LDLR-212ENST00000560467 CHP1Q99653 195 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 ARID3AQ99856 593 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 TSGA10Q9BZW7 698 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 GTSE1Q9NYZ3 720 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 ADAMTS1Q9UHI8 967 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 CNTN6Q9UQ52 1028 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 SLC27A5Q9Y2P5 690 aa12.44□□□□□ -0.42
LDLR-212ENST00000560467 MYBPHLA2RUH7 354 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 PPEF2O14830 753 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 PAPSS2O95340 614 aaPredicted RBP12.43□□□□□ -0.42
LDLR-212ENST00000560467 PRAMEF12O95522 483 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 VDRP11473 427 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 ACO1P21399 889 aaKnown RBP12.43□□□□□ -0.42
LDLR-212ENST00000560467 MAGEA1P43355 309 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 AARSP49588 968 aaKnown RBP eCLIP12.43□□□□□ -0.42
LDLR-212ENST00000560467 EPHB3P54753 998 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 CDR2Q01850 454 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 TNK2Q07912 1038 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 KIF5AQ12840 1032 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms