RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ANKS4BQ8N8V4 417 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 P3H4Q92791 437 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 MRRFQ96E11 262 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 RNF157Q96PX1 679 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 ADAM33Q9BZ11 813 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PHACTR1Q9C0D0 580 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 NSRP1Q9H0G5 558 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 RNF39Q9H2S5 420 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 XPO7Q9UIA9 1087 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 RABGEF1Q9UJ41 708 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 ZMYND8Q9ULU4 1186 aaPredicted RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 ABT1Q9ULW3 272 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 GABRQQ9UN88 632 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PIN4Q9Y237 131 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 SMIM28A0A1B0GU29 152 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 CCT8L1PA6NM43 557 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 A8MXQ7 604 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PIRO00625 290 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 SNX3O60493 162 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 ATP2C2O75185 946 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PDGFRBP09619 1106 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 C6orf222P0C671 652 aaPredicted RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 SETSIPP0DME0 302 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 CYBAP13498 195 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 AXLP30530 894 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 SDC4P31431 198 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 STX2P32856 288 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 HDAC4P56524 1084 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 WDR4P57081 412 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 BASP1P80723 227 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 TFDP2Q14188 446 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 FBXO47Q5MNV8 452 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 NUGGCQ68CJ6 796 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 ARHGAP17Q68EM7 881 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 DARS2Q6PI48 645 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 UNC93AQ86WB7 457 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PLD5Q8N7P1 536 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 C7orf31Q8N865 590 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PYROXD1Q8WU10 500 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 TRIB2Q92519 343 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 SNRNP25Q9BV90 132 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 KDM4CQ9H3R0 1056 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 GOLGA2P5Q9HBQ8 144 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 PCDH18Q9HCL0 1135 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 HESX1Q9UBX0 185 aa11.53□□□□□ -0.56
SPG11-217ENST00000559511 UBQLN1Q9UMX0 589 aaKnown RBP11.53□□□□□ -0.56
SPG11-217ENST00000559511 FAM47DPA6NHR8 397 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 MAP3K6O95382 1288 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 ADORA2BP29275 332 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 FOXN2P32314 431 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 CRYBB1P53674 252 aaPredicted RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 ATXN1P54253 815 aaKnown RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 SOX4Q06945 474 aaPredicted RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 SLC20A2Q08357 652 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 NR1H3Q13133 447 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 PDK2Q15119 407 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 LACTB2Q53H82 288 aaPredicted RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 BOLA3Q53S33 107 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 FAM47CQ5HY64 1035 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 EFHC2Q5JST6 749 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 UBXN11Q5T124 520 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 SYCP2LQ5T4T6 812 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 ARHGEF18Q6ZSZ5 1173 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 CNPY4Q8N129 248 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 FBXO36Q8NEA4 188 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 PCDH19Q8TAB3 1148 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 LRRN4Q8WUT4 740 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 TEKT4Q8WW24 435 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 MAGEB18Q96M61 343 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 TGS1Q96RS0 853 aaKnown RBP11.52□□□□□ -0.57
SPG11-217ENST00000559511 TRABDQ9H4I3 376 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 USP29Q9HBJ7 922 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 NKIRAS1Q9NYS0 192 aa11.52□□□□□ -0.57
SPG11-217ENST00000559511 A0A1W2PPM1 405 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 KPNA7A9QM74 516 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 H7C0C1 242 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 GNAT1P11488 350 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 KRT15P19012 456 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 STIP1P31948 543 aaKnown RBP11.51□□□□□ -0.57
SPG11-217ENST00000559511 SCTRP47872 440 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 ATP5OP48047 213 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 FCGRTP55899 365 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 GEMIN4P57678 1058 aaKnown RBP11.51□□□□□ -0.57
SPG11-217ENST00000559511 GJA9P57773 515 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 KCNJ11Q14654 390 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 ZKSCAN8Q15776 578 aaPredicted RBP11.51□□□□□ -0.57
SPG11-217ENST00000559511 BBS9Q3SYG4 887 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 GNASQ5JWF2 1037 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 PPP1R21Q6ZMI0 780 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 C3orf62Q6ZUJ4 267 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 IGDCC3Q8IVU1 814 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 MAP7D3Q8IWC1 876 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 C4orf33Q8N1A6 199 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 NME8Q8N427 588 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 ATP11CQ8NB49 1132 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 ARRDC4Q8NCT1 418 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 STK32AQ8WU08 396 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 MAGEB5Q9BZ81 275 aa11.51□□□□□ -0.57
SPG11-217ENST00000559511 ACTR5Q9H9F9 607 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms