RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 LRRC59Q96AG4 307 aaKnown RBP8.77□□□□□ -1.01
USP3-211ENST00000559257 ISOC1Q96CN7 298 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TCEANC2Q96MN5 208 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PIP5K1AQ99755 562 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 CLSTN3Q9BQT9 956 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TMEM168Q9H0V1 697 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 TMOD2Q9NZR1 351 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 GTF2IRD1Q9UHL9 959 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 PCDHB13Q9Y5F0 798 aa8.77□□□□□ -1.01
USP3-211ENST00000559257 A8MU76 341 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FAM25AB3EWG3 89 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FAM25CB3EWG5 89 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FAM25GB3EWG6 89 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PRSS44E7EML9 344 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PI4K2BG5E9Z4 385 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PSMD12O00232 456 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 BTN3A1O00481 513 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 RAD51BO15315 384 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 DYRK3O43781 588 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 DNAJA2O60884 412 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ATG13O75143 517 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 IFNA16P05015 189 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 KRT13P13646 458 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 POLR2BP30876 1174 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 CIITAP33076 1130 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MLLT3P42568 568 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 ABCG1P45844 678 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ITGADQ13349 1161 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TAF1CQ15572 869 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 LRIT3Q3SXY7 679 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 SLC10A5Q5PT55 438 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TTC39AQ5SRH9 613 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MEI1Q5TIA1 1274 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 OR7E24Q6IFN5 339 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TTI2Q6NXR4 508 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ERAP2Q6P179 960 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CHPFQ8IZ52 775 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 IFNL3Q8IZI9 196 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 GDPD5Q8WTR4 605 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TGFBRAP1Q8WUH2 860 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TMEM80Q96HE8 168 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FAM167AQ96KS9 214 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 EMILIN2Q9BXX0 1053 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 LIN28AQ9H9Z2 209 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 SP110Q9HB58 689 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TAS2R1Q9NYW7 299 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP3-211ENST00000559257 BCAP29Q9UHQ4 241 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ACTL7BQ9Y614 415 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ZNF532Q9HCE3 1301 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 DLG5Q8TDM6 1919 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ASNA1O43681 348 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CDH16O75309 829 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TM7SF2O76062 418 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CDK14O94921 469 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 HOXB3P14651 431 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 GAP43P17677 238 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TTKP33981 857 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CEBPAP49715 358 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 ST13P50502 369 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 DRG2P55039 364 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 YWHAGP61981 247 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP3-211ENST00000559257 CDK16Q00536 496 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CDK10Q15131 360 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TOMM20Q15388 145 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 SLC9C1Q4G0N8 1177 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 OGFRL1Q5TC84 451 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 DUPD1Q68J44 220 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 STK32CQ86UX6 486 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 IGFN1Q86VF2 1251 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TMEM126BQ8IUX1 230 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MB21D2Q8IYB1 491 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 SRRM1Q8IYB3 904 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 CLIP4Q8N3C7 705 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 KCNH5Q8NCM2 988 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ZNF507Q8TCN5 953 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 WASF1Q92558 559 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 JADE3Q92613 823 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 KRT35Q92764 455 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 AK8Q96MA6 479 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 TTC25Q96NG3 672 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PANX3Q96QZ0 392 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 RMDN3Q96TC7 470 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ZKSCAN3Q9BRR0 538 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MCMBPQ9BTE3 642 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ZSCAN5AQ9BUG6 496 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 C1orf50Q9BV19 199 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 DSCC1Q9BVC3 393 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 CDK19Q9BWU1 502 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 ERVMER34-1Q9H9K5 563 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MRPL40Q9NQ50 206 aaKnown RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 CHST12Q9NRB3 414 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 NKIRAS1Q9NYS0 192 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 FBXO40Q9UH90 709 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PCOLCE2Q9UKZ9 415 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 PHTF1Q9UMS5 762 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 SIK3Q9Y2K2 1263 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 RIPK3Q9Y572 518 aa8.76□□□□□ -1.01
USP3-211ENST00000559257 MAFBQ9Y5Q3 323 aaPredicted RBP8.76□□□□□ -1.01
USP3-211ENST00000559257 RIMBP3CA6NJZ7 1639 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms