RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 KLC3Q6P597 504 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 SLC51AQ86UW1 340 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 LRRC71Q8N4P6 559 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 MRPL1Q9BYD6 325 aaKnown RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 MRPS26Q9BYN8 205 aaKnown RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 UNKQ9C0B0 810 aaKnown RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 VAV3Q9UKW4 847 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 USP18Q9UMW8 372 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 SOX13Q9UN79 622 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 V9GYQ6 96 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 MYH15Q9Y2K3 1946 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 C2CD2LO14523 706 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 PSMD10O75832 226 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 AP3M2P53677 418 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 DEFA1P59665 94 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 DEFA3P59666 94 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 MYL6P60660 151 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 ACVR2BQ13705 512 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 GOLGA7BQ2TAP0 167 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 DIS3LQ8TF46 1054 aaKnown RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 GMCL1Q96IK5 515 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 CAMTA1Q9Y6Y1 1673 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 KCPQ6ZWJ8 1503 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 SMAPO00193 183 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 HNRNPRO43390 633 aaKnown RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 TPBGLP0DKB5 382 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 MLH1P40692 756 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 NCKAP1LP55160 1127 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 PPP1R15BQ5SWA1 713 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 ULK2Q8IYT8 1036 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 ZNF786Q8N393 782 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 USP33Q8TEY7 942 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 PBXIP1Q96AQ6 731 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 CEP41Q9BYV8 373 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 TMEM39BQ9GZU3 492 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 SEMA6AQ9H2E6 1030 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 RNPEPQ9H4A4 650 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 AVENQ9NQS1 362 aaPredicted RBP7.36□□□□□ -1.23
USP3-210ENST00000559192 KCNQ5Q9NR82 932 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 WASF2Q9Y6W5 498 aa7.36□□□□□ -1.23
USP3-210ENST00000559192 MROH7Q68CQ1 1323 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 WDR27A2RRH5 827 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 TMEM191CA6NGB0 347 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 PRR23D1E9PI22 279 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 GLRA3O75311 464 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 FAM155BO75949 473 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 PRR23D2P0DMB1 279 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 PSMC3P17980 439 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 GLRBP48167 497 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 RPL7AP62424 266 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 C1QBPQ07021 282 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 ACAP1Q15027 740 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 FNBP1LQ5T0N5 605 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 RC3H1Q5TC82 1133 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 BNC2Q6ZN30 1099 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 POLNQ7Z5Q5 900 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 FAM228AQ86W67 206 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 DDIASQ8IXT1 998 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 NUP93Q8N1F7 819 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 TDRD5Q8NAT2 981 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 ZSCAN18Q8TBC5 510 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 SGF29Q96ES7 293 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 CADM1Q9BY67 442 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 BRD8Q9H0E9 1235 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ADNPQ9H2P0 1102 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ANKEF1Q9NU02 776 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 SLC39A10Q9ULF5 831 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 SNX13Q9Y5W8 968 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 CDY2AQ9Y6F7 541 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 CDY1Q9Y6F8 540 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ZC3H11AO75152 810 aaKnown RBP eCLIP7.35□□□□□ -1.23
USP3-210ENST00000559192 LYPLA1O75608 230 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 NR3C2P08235 984 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 TFE3P19532 575 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 ACTR2P61160 394 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 NSUN2Q08J23 767 aaKnown RBP eCLIP7.35□□□□□ -1.23
USP3-210ENST00000559192 SPP2Q13103 211 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 MYBPC2Q14324 1141 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 USP10Q14694 798 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 XKR3Q5GH77 459 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 TEDDM1Q5T9Z0 273 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 GSTCDQ8NEC7 633 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 OR6Y1Q8NGX8 325 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 RNF217Q8TC41 542 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ZNF606Q8WXB4 792 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ELMO2Q96JJ3 720 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 ZBTB45Q96K62 511 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 CATSPER2Q96P56 530 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 CRAMP1Q96RY5 1269 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 TMEM109Q9BVC6 243 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 RAD21L1Q9H4I0 556 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 COPS7BQ9H9Q2 264 aaPredicted RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 CISHQ9NSE2 258 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 KCNK4Q9NYG8 393 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 BFARQ9NZS9 450 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 POLIQ9UNA4 740 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 SRP72O76094 671 aaKnown RBP7.35□□□□□ -1.23
USP3-210ENST00000559192 RALBP11234 206 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 CHRNB2P17787 502 aa7.35□□□□□ -1.23
USP3-210ENST00000559192 MUTP22033 750 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms