RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TRIM62Q9BVG3 475 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 MAK16Q9BXY0 300 aaKnown RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 DPEP3Q9H4B8 488 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 ZWILCHQ9H900 591 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 TRMT13Q9NUP7 481 aaKnown RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 DDX43Q9NXZ2 648 aaKnown RBP13.21□□□□□ -0.3
SHMT2-229ENST00000557348 PTPN22Q9Y2R2 807 aa13.21□□□□□ -0.3
SHMT2-229ENST00000557348 C3orf70A6NLC5 250 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-229ENST00000557348 APOC4-APOC2K7ER74 178 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 ARVCFO00192 962 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 APOC2P02655 101 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 TYMPP19971 482 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 SCN1AP35498 2009 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 HSD17B3P37058 310 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 CLCNKBP51801 687 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 CAP1Q01518 475 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 SNX1Q13596 522 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 ITIH4Q14624 930 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 TRADDQ15628 312 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 DAB2IPQ5VWQ8 1189 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 DCLRE1AQ6PJP8 1040 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 TRMT10CQ7L0Y3 403 aaKnown RBP13.2□□□□□ -0.3
SHMT2-229ENST00000557348 STRADAQ7RTN6 431 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 GSTA5Q7RTV2 222 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 PSTKQ8IV42 348 aaKnown RBP13.2□□□□□ -0.3
SHMT2-229ENST00000557348 ARFGAP1Q8N6T3 406 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 FBXO25Q8TCJ0 367 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 UBLCP1Q8WVY7 318 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-229ENST00000557348 RAPGEF5Q92565 580 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 SYT15Q9BQS2 421 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 PLCD4Q9BRC7 762 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 MED10Q9BTT4 135 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 TXLNGYQ9BZA5 131 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 LRRC4Q9HBW1 653 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 SLC12A6Q9UHW9 1150 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 STAP1Q9ULZ2 295 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 NME7Q9Y5B8 376 aa13.2□□□□□ -0.3
SHMT2-229ENST00000557348 PI4K2BG5E9Z4 385 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 DNM1LO00429 736 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ENDOD1O94919 500 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 NUDT17P0C025 328 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 RARGP13631 454 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 TCF4P15884 667 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ZFXP17010 805 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 FLT3P36888 993 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ADCY8P40145 1251 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 KCNJ1P48048 391 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 CTCFP49711 727 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 PMS2P54278 862 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 CCDC14Q49A88 953 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ANKRD20A8PQ5CZ79 823 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 KAZNQ674X7 775 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ZDHHC24Q6UX98 284 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 PCGF5Q86SE9 256 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF598Q86UK7 904 aaKnown RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 HOOK3Q86VS8 718 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 OSTM1Q86WC4 334 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 SIX6OS1Q8N1H7 587 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 THEM5Q8N1Q8 247 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ATG4AQ8WYN0 398 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 CENPIQ92674 756 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 N4BP2L2Q92802 583 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 LPPQ93052 612 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 SMARCD1Q96GM5 515 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ACBD6Q9BR61 282 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF670Q9BS34 389 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 DDX23Q9BUQ8 820 aaKnown RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 NEUROG2Q9H2A3 272 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 PABPC3Q9H361 631 aaKnown RBP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 PCDH9Q9HC56 1237 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 WBP1LQ9NX94 342 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 RRN3Q9NYV6 651 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.19□□□□□ -0.3
SHMT2-229ENST00000557348 ZNF148Q9UQR1 794 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 PLAAQ9Y263 795 aa13.19□□□□□ -0.3
SHMT2-229ENST00000557348 CCDC189A1A4V9 331 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 E7EVH7 732 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 M0QZQ0 153 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MCF2LO15068 1137 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 MGEA5O60502 916 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 DAB1O75553 588 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 KRT14P02533 472 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 SELPP16109 830 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 TGM2P21980 687 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 IL1R2P27930 398 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 AIF1P55008 147 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PPP2R2AP63151 447 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 IFT88Q13099 833 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 KRT81Q14533 505 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ATP13A4Q4VNC1 1196 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 DENND2CQ68D51 928 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 TLDC1Q6P9B6 456 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 PIGZQ86VD9 579 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 SCUBE3Q8IX30 993 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 ALLCQ8N6M5 410 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 GBP7Q8N8V2 638 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-229ENST00000557348 RNF169Q8NCN4 708 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 SLC35B2Q8TB61 432 aa13.18□□□□□ -0.3
SHMT2-229ENST00000557348 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms