RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 DDHD1Q8NEL9 900 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ERLEC1Q96DZ1 483 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ZFRQ96KR1 1074 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 TRPC7Q9HCX4 862 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ARHGEF3Q9NR81 526 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 KCNK4Q9NYG8 393 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 BAG5Q9UL15 447 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 WASF2Q9Y6W5 498 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 TBC1D12O60347 775 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 POLBP06746 335 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 LINGO3P0C6S8 592 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 HSPA1AP0DMV8 641 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 HSPA1BP0DMV9 641 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CCNB1P14635 433 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 MARSP56192 900 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 PPP4CP60510 307 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 MRPS22P82650 360 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 PARP6Q2NL67 630 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 VSTM1Q6UX27 236 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CCDC81Q6ZN84 652 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 STRA8Q7Z7C7 330 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 PLD3Q8IV08 490 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 HACE1Q8IYU2 909 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ABRAQ8N0Z2 381 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 GSTCDQ8NEC7 633 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CADM1Q9BY67 442 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 FRMD8P1Q9BZ68 369 aaPredicted RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 DENND2DQ9H6A0 471 aaPredicted RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 BCAS3Q9H6U6 928 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CYP4F12Q9HCS2 524 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CLIC5Q9NZA1 410 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 LRP6O75581 1613 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 M0QZ92 97 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 GSC2O15499 205 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 MAN1A2O60476 641 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CHEK2O96017 543 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 THRAP10827 490 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 RAB27AP51159 221 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ARPP19P56211 112 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 MMRN1Q13201 1228 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 RIPK1Q13546 671 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 TRIM25Q14258 630 aaKnown RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 TAF12Q16514 161 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 SPRED3Q2MJR0 410 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 C6orf89Q6UWU4 347 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 C1orf186Q6ZWK4 172 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 CLVS1Q8IUQ0 354 aaPredicted RBP5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ETNPPLQ8TBG4 499 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 EPS8L1Q8TE68 723 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 PTPRN2Q92932 1015 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 S100A14Q9HCY8 104 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 ARHGEF38Q9NXL2 777 aa5.15□□□□□ -1.58
SYNE2-223ENST00000557005 SPATA31A1Q5TZJ5 1347 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 DDTLA6NHG4 134 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NCF1BA6NI72 391 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ZNF839A8K0R7 811 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NCF1CA8MVU1 366 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 PRPF4O43172 522 aaKnown RBP eCLIP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 TPST1O60507 370 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 MYL3P08590 195 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ABHD2P08910 425 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 OCM2P0CE71 109 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 OCMP0CE72 109 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 RBP3P10745 1247 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 COX4I1P13073 169 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NCF1P14598 390 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 CYP2F1P24903 491 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 FOXN2P32314 431 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 MYL6P60660 151 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 TSTA3Q13630 321 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 POLD3Q15054 466 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ITPRIPL1Q6GPH6 555 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 MOXD1Q6UVY6 613 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ANGPTL8Q6UXH0 198 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 CYP2R1Q6VVX0 501 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 PATL1Q86TB9 770 aaKnown RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ZNF554Q86TJ5 538 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 STKLD1Q8NE28 680 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NSUN6Q8TEA1 469 aaKnown RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 FAM172AQ8WUF8 416 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 GLMNQ92990 594 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 CDHR1Q96JP9 859 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NIF3L1Q9GZT8 377 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 FAM49AQ9H0Q0 323 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 EBF2Q9HAK2 575 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 DMAP1Q9NPF5 467 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 KCNQ5Q9NR82 932 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 WDR35Q9P2L0 1181 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 ATXN10Q9UBB4 475 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 PCDHAC2Q9Y5I4 1007 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 EDF1O60869 148 aaKnown RBP5.15□□□□□ -1.59
SYNE2-223ENST00000557005 TNFAIP8O95379 198 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 FGRP09769 529 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 PHKA2P46019 1235 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 DMPKQ09013 629 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NFIAQ12857 509 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 NEDD8Q15843 81 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 TRIM16LQ309B1 348 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 MTHFD1LQ6UB35 978 aa5.15□□□□□ -1.59
SYNE2-223ENST00000557005 SNX32Q86XE0 403 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms